Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f03r
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    97   2e-22
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    42   8e-06
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    42   8e-06
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   7.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   7.2  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   9.5  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 96.7 bits (230), Expect = 2e-22
 Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
 Frame = -2

Query: 749 ISLIYGTPRAATVRARTSLKLWGLDRDSYRRILMGSTIRKRRMYDEFLSRVSILESLEKW 570
           ++++Y   R AT+ A T  +LW +DR  ++ I+M + + ++  Y +FL  V I ++L + 
Sbjct: 168 LAILYNCKRTATITAATDCQLWAIDRQCFQTIMMRTGLSRQAEYTDFLKSVPIFKNLPEE 227

Query: 569 ERLTVADALEPVSFNDSETIVRQGEPGNDFYIIVEGTAVVLQQRGAGGEAVEVGRLGPSD 390
             + ++D LE   +N+ + I+RQG  G+ F+II  G   V  ++    E   +  L   D
Sbjct: 228 TLIKISDVLEETFYNNGDYIIRQGARGDTFFIISRGQVRVTIKQPDTPEEKYIRTLSKGD 287

Query: 389 YFGEIALLLDRPRAATVRAHGP--LKCVKLDRARFERVLGLCADILKR 252
           +FGE AL  D  R A + A  P  + C+ +DR  F +++    +I  R
Sbjct: 288 FFGEKALQGDDLRTANIIADDPEGVSCLVIDRETFNQLISSLDEIRTR 335



 Score = 41.5 bits (93), Expect = 8e-06
 Identities = 24/85 (28%), Positives = 43/85 (50%)
 Frame = -2

Query: 533 SFNDSETIVRQGEPGNDFYIIVEGTAVVLQQRGAGGEAVEVGRLGPSDYFGEIALLLDRP 354
           SF+   TI+R+G+ G+  Y++ EG   V +      +   +  L P    GE+A+L +  
Sbjct: 122 SFSAGSTIIREGDVGSIVYVMEEGKVEVSR------DGKYLSTLAPGKVLGELAILYNCK 175

Query: 353 RAATVRAHGPLKCVKLDRARFERVL 279
           R AT+ A    +   +DR  F+ ++
Sbjct: 176 RTATITAATDCQLWAIDRQCFQTIM 200


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 41.5 bits (93), Expect = 8e-06
 Identities = 28/84 (33%), Positives = 37/84 (44%)
 Frame = -2

Query: 530 FNDSETIVRQGEPGNDFYIIVEGTAVVLQQRGAGGEAVEVGRLGPSDYFGEIALLLDRPR 351
           F   + I+++G  G+  Y I EG   ++    A GE      L    YFGEI LL +  R
Sbjct: 477 FQPGDIIIKEGTIGSKMYFIQEGIVDIVM---ANGEVAT--SLSDGSYFGEICLLTNARR 531

Query: 350 AATVRAHGPLKCVKLDRARFERVL 279
            A+VRA        L    F  VL
Sbjct: 532 VASVRAETYCNLFSLSVDHFNAVL 555


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 41.5 bits (93), Expect = 8e-06
 Identities = 28/84 (33%), Positives = 37/84 (44%)
 Frame = -2

Query: 530 FNDSETIVRQGEPGNDFYIIVEGTAVVLQQRGAGGEAVEVGRLGPSDYFGEIALLLDRPR 351
           F   + I+++G  G+  Y I EG   ++    A GE      L    YFGEI LL +  R
Sbjct: 445 FQPGDIIIKEGTIGSKMYFIQEGIVDIVM---ANGEVAT--SLSDGSYFGEICLLTNARR 499

Query: 350 AATVRAHGPLKCVKLDRARFERVL 279
            A+VRA        L    F  VL
Sbjct: 500 VASVRAETYCNLFSLSVDHFNAVL 523


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 37  KYILYIVKSNRIFILITVLYFSFN 108
           KY+L+    N + IL+TV+  ++N
Sbjct: 298 KYLLFTFIMNTVSILVTVIIINWN 321


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 517 KPLFVKVNPETIST 476
           K + V  NPET+ST
Sbjct: 413 KTIMVNYNPETVST 426


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 476 IIVEGTAVVLQQRGAGGEAVEVGRLGPSDYFGE 378
           +++  T  +L Q  +  +AVE G +GP+   G+
Sbjct: 344 VLLNPTDKMLVQDISSPDAVEYGIIGPTTCMGD 376


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 320 KCVKLDRARFERVLGLCADILKRNIAQYNS 231
           +  KLD  +  R++  C DI + N  + +S
Sbjct: 87  RTTKLDSEQVNRLVNNCKDITESNSCKKSS 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,637
Number of Sequences: 438
Number of extensions: 4244
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)