Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f03f
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...    35   0.011
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.2  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   2.9  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    26   5.1  
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    26   5.1  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    25   6.7  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    25   8.9  

>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 407 RRGGISAEPVTEEDATSYVKKVVP-KDYKTMGALSRAIASNVLFTHLDESERADMFDAM 580
           RR  +S E +         K+  P KD + +  L R++A N LF +LDE    ++ +AM
Sbjct: 101 RRQSVSTESMNPSAFALETKRTFPPKDPEDLKRLKRSVAGNFLFKNLDEEHYNEVLNAM 159



 Score = 26.6 bits (56), Expect = 2.9
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = +2

Query: 344 SEGEADGELSPLPVPGGQLPRRRGGISAEP---VTEEDATSYVKKVVPKDYKTMGALSRA 514
           S GE  GEL+ +       PR    +S  P   +   D TS+ + V    Y+        
Sbjct: 217 SPGEYFGELALMY----NAPRAASVVSKTPNNVIYALDRTSFRRIVFENAYRQRMLYESL 272

Query: 515 IASNVLFTHLDESERADMFDAMFPVQCLPGETVIRQ 622
           +    + + LD+ +R  + DA+  V    G  VIRQ
Sbjct: 273 LEEVPILSSLDKYQRQKIADALQTVVYQAGSIVIRQ 308


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 612  TVSPGRHWTGNIASNISALSDSS 544
            TV+PGR W  N+A+ I A++ +S
Sbjct: 2067 TVAPGRVWITNVAAWIYAIASAS 2089


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 353 EADGELSPLPVPGGQLPRRRGGISAEPVTEEDATSYVKKVVPKDYK 490
           E +  ++ LP+P G     R   S+ P+ E ++ S +K  +  D+K
Sbjct: 498 EIEKPIASLPLPNGNDTISRSSESSSPINESESNSLLK--LQSDFK 541


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 221 LKDCIVQLCVNKPENPVSFLRQHFQ 295
           ++D + +L ++ P+N  SFL  HFQ
Sbjct: 11  VEDSLNKLSLSPPDNNSSFLSNHFQ 35


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
 Frame = +2

Query: 458 YVKKVVPKDYKTMG----ALSRAIASNVLFTHL 544
           YV+K++P+D++ +G     LS+  A+ ++  H+
Sbjct: 26  YVRKIIPEDFQIIGYARSKLSQEAANKIVTAHI 58


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 242 LCVNKPENPVSFLRQHFQKLEREQVK 319
           LCV + ENP + LR  FQK+ +  V+
Sbjct: 861 LCVAEYENPSAELRDMFQKILQGSVE 886


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 493 CFVIFWHHLFNITSSIFFGYGLCTYTPASPW 401
           C +I W  + N  S ++    L   + ASPW
Sbjct: 32  CEIIIWFAIINKVSGLYGIVSLFQNSDASPW 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,462
Number of Sequences: 5004
Number of extensions: 39413
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)