Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f03f
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1342 + 32775582-32775796,32776589-32776794,32777356-327774... 32 0.32
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834... 30 1.3
10_08_0290 + 16549048-16549262,16549770-16549833,16550106-165502... 30 1.7
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 30 1.7
03_02_0710 + 10587969-10588069,10588181-10588262,10588362-105884... 29 4.0
04_03_0826 + 20103105-20103697,20104222-20104391,20104487-201047... 28 6.9
03_01_0502 - 3779551-3779562,3779863-3780012,3780129-3780172,378... 28 6.9
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 28 6.9
01_05_0497 + 22738716-22738793,22738932-22739015,22739490-227395... 27 9.2
>04_04_1342 +
32775582-32775796,32776589-32776794,32777356-32777492,
32778758-32778860,32778961-32779079,32779282-32779346,
32779426-32779642,32779713-32779934
Length = 427
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -3
Query: 438 VTGSALIPPRLLGSCPPGTGRG 373
VT S L PPRL SCP GRG
Sbjct: 2 VTASGLAPPRLAVSCPRAAGRG 23
>12_02_0667 +
21682386-21682944,21683042-21683201,21683419-21683467,
21683570-21683683,21683794-21684294,21684594-21684980,
21685074-21685172,21685380-21685478,21685817-21685890,
21686387-21687023
Length = 892
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 490 FVIFW--HHLFNITSSIFFGYGLCTYTPASPW*LSPW 386
F +FW HHLF I F +G+C Y + W + W
Sbjct: 556 FNMFWYSHHLFVIVYIAFVVHGVCLYINRTWWKQTTW 592
>10_08_0290 +
16549048-16549262,16549770-16549833,16550106-16550267,
16550786-16550956,16551041-16551235,16551421-16551546,
16551648-16551809,16551953-16552120,16552223-16552435
Length = 491
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Frame = +2
Query: 347 EGEADGELSPLPV-PGGQL----PRRRGGISAEPVTEEDATSYVKKVVPKDYKTMGALSR 511
EG + GE P P +L R + + P E YV V P DY +G
Sbjct: 4 EGRSVGEEEPRGKRPAAELRLFDTRTKAAVPFRPRVEGKVAMYVCGVTPYDYSHVGHARA 63
Query: 512 AIASNVLFTHL 544
+A +VLF +L
Sbjct: 64 YVAFDVLFRYL 74
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 38 VHREFKFLRYKILTVVTCCF-VKFMLIRLPIGCNKNFK 148
V R + L I+++ CC+ K ++I+LPIG NF+
Sbjct: 186 VERALRVLDGAIMSICQCCWGAKPLVIQLPIGSEDNFQ 223
>03_02_0710 +
10587969-10588069,10588181-10588262,10588362-10588414,
10588828-10589315,10589415-10589575,10589699-10589896,
10590091-10590277,10590355-10590611
Length = 508
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +2
Query: 347 EGEADGELSPLPVPGGQLPRRRGGISAEPVTEEDATSYVKKVVPKDYKTMGALSRAIASN 526
E DG+ L P + RRR I+ + E Y+++ +PK + + + N
Sbjct: 11 EEVVDGDEDELASP--EAKRRRTFINNSSMQEAIGAQYMQRHLPKLEPFLRRVVQEEVQN 68
Query: 527 VLFTHLDESER 559
VL H+D + R
Sbjct: 69 VLIRHIDSAHR 79
>04_03_0826 +
20103105-20103697,20104222-20104391,20104487-20104716,
20104825-20104933,20104967-20105154,20105818-20105919,
20106114-20106395,20106504-20106625,20106708-20107020,
20107096-20107329,20107477-20107767,20107975-20108286
Length = 981
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 401 PRRRGGISAEPVTEEDATSYVKKVVPKDYKTMGALSRAIASNVLFTHLDESERADM 568
PRRRGG+ V E VK VV + G +A + L L +R+ +
Sbjct: 59 PRRRGGVVVRAVFERFTERAVKAVVFSQREARGMGDETVAPHHLLLGLVAEDRSPL 114
>03_01_0502 -
3779551-3779562,3779863-3780012,3780129-3780172,
3780256-3780319,3780422-3780655,3780765-3780908,
3781027-3781221,3781447-3781522,3781689-3781788,
3781955-3781988,3782076-3782160,3782226-3782290,
3782380-3782478,3782810-3782875,3785485-3785721
Length = 534
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 486 TKQWVPYHALLHQMYCLHIWMNLRGLICLMLCFLSNVFLVKLLFDK 623
T W + L C NL+G + + FLS ++ L+F K
Sbjct: 224 TNNWHKWFPFLKTRACCEACANLKGAFLVAVIFLSLCLVITLIFAK 269
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = -2
Query: 490 FVIFW--HHLFNITSSIFFGYGLCTY 419
F FW HHLF I ++ F +G C Y
Sbjct: 534 FNAFWFTHHLFVIVYTLLFVHGTCLY 559
>01_05_0497 +
22738716-22738793,22738932-22739015,22739490-22739547,
22739641-22739741,22739870-22739897,22740078-22740109,
22740163-22740258,22740350-22740443,22741796-22742033,
22742658-22743024
Length = 391
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 468 RWCQKITKQWVPYHALLHQMYCLHIWMNLRGLICLMLCFLSNVF-LVKLLF 617
RW K+W Y + Y + + + CL C+ +N F LV +LF
Sbjct: 93 RWIYYRYKKWHYYLLFSYGYYNREEALQFQAIDCLDFCYYANTFLLVMILF 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,659,505
Number of Sequences: 37544
Number of extensions: 242354
Number of successful extensions: 707
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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