Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f03f
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52453| Best HMM Match : cNMP_binding (HMM E-Value=1.9e-26) 100 1e-21
SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39) 50 2e-06
SB_45658| Best HMM Match : Sushi (HMM E-Value=0) 29 2.3
SB_23938| Best HMM Match : KCl_Cotrans_1 (HMM E-Value=5.7) 29 3.1
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40) 28 5.4
SB_24361| Best HMM Match : 7tm_1 (HMM E-Value=9.7e-40) 28 5.4
SB_335| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_34318| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-30) 27 9.4
SB_4066| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_21655| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-30) 27 9.4
>SB_52453| Best HMM Match : cNMP_binding (HMM E-Value=1.9e-26)
Length = 370
Score = 100 bits (239), Expect = 1e-21
Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Frame = +2
Query: 191 YIQTHNIQLLLKDCIVQLCVNKPENPVSFLRQHFQKLER-EQVKXXXXXXXXSEGEADGE 367
Y++ HNIQ +LKDCIVQLC++KPENP F R++F+KLE+ + K +E E E
Sbjct: 20 YVEKHNIQGVLKDCIVQLCISKPENPYKFFREYFEKLEKGHEEKKEETARLEAEPEQRAE 79
Query: 368 LSPLPVPGGQLPR-RRGGISAEPVTEEDATSYVKKV 472
+ P P R RRG +SA P+TE++ATSYVKKV
Sbjct: 80 VEEHPPPSKPFQRQRRGAVSAAPITEDEATSYVKKV 115
>SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)
Length = 373
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 3/137 (2%)
Frame = +2
Query: 218 LLKDCIVQLCVNKPENPVSFLRQHFQKLEREQVKXXXXXXXXS---EGEADGELSPLPVP 388
LL++ +V+ PE+ V F +F L+R + K E E +L+P P
Sbjct: 16 LLEEFVVKCIQENPEDIVEFAADYFNMLKRFKEKKAASKQAAQSKKESEDKDDLAPAEQP 75
Query: 389 GGQLPRRRGGISAEPVTEEDATSYVKKVVPKDYKTMGALSRAIASNVLFTHLDESERADM 568
+ RR +SAEP + + K PK + L + + LF + +
Sbjct: 76 IIKGRSRRAAVSAEPYNPNENADFKAKFHPKSEEQRNHLKKKLLELWLFEKFHREDLDVI 135
Query: 569 FDAMFPVQCLPGETVIR 619
D+MF + P E +I+
Sbjct: 136 LDSMFEKKVSPEEIIIK 152
>SB_45658| Best HMM Match : Sushi (HMM E-Value=0)
Length = 875
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 233 IVQLCVNKPENPVSFLRQHFQKLEREQVKXXXXXXXXSEGEADGELSPL 379
++Q C+N P+ PVS + Q++ + SE E D L+ L
Sbjct: 640 LIQTCLNSPDPPVSQIPNPDQRMSATGYEETDLTYTVSENETDKMLAQL 688
>SB_23938| Best HMM Match : KCl_Cotrans_1 (HMM E-Value=5.7)
Length = 320
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 251 LHITERCNLSATIECYEF--EYSLHIHVNIVLLPFLF*SFCYN 129
+H+ C + C++F ++ IH+ + +L +F S+C+N
Sbjct: 197 IHLAPYCGYEFKVICWDFNNDFKEAIHMAVDMLVHVFRSYCFN 239
>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
Length = 1413
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -1
Query: 191 SLHIHVNIVLL---PFLF*SFCYNQLV 120
S+HI+ I LL PFL SFCY Q++
Sbjct: 1155 SIHIYCTITLLGILPFLILSFCYFQIL 1181
>SB_24361| Best HMM Match : 7tm_1 (HMM E-Value=9.7e-40)
Length = 430
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -1
Query: 191 SLHIHVNIVLL---PFLF*SFCYNQLV 120
S+HI+ I LL PFL SFCY Q++
Sbjct: 278 SIHIYCTITLLGILPFLILSFCYFQIL 304
>SB_335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 239 QLCVNKPENPVSFLRQHFQKLEREQVKXXXXXXXXSEGEADGELSPLPVPGGQ 397
QL + +P++F RQ + E + +EG+ DG++ P P G Q
Sbjct: 25 QLDIVMENHPLAFGRQFLLCMSNEAKQGGKILPHPTEGKQDGKILPHPTEGKQ 77
>SB_34318| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-30)
Length = 343
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 495 WVPYHALLHQMYCLHIWMN 551
WVPYHAL +Y ++W N
Sbjct: 253 WVPYHAL--TLYISYVWKN 269
>SB_4066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 486 TKQWVPYHALLHQMYCLHIWMNLRGLICLML 578
TK PY L+ + +H W++L L CL L
Sbjct: 271 TKTGRPYRCLIPDIEAMHNWIHLFLLFCLSL 301
>SB_21655| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-30)
Length = 343
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 495 WVPYHALLHQMYCLHIWMN 551
WVPYHAL +Y ++W N
Sbjct: 253 WVPYHAL--TLYISYVWKN 269
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,155,522
Number of Sequences: 59808
Number of extensions: 287834
Number of successful extensions: 708
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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