Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f03f
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39652-7|AAA80405.2|  366|Caenorhabditis elegans Protein kinase ...   126   1e-29
U39652-6|ABI18144.1|  376|Caenorhabditis elegans Protein kinase ...   126   1e-29
J05220-1|AAA27980.1|  376|Caenorhabditis elegans protein ( C.ele...   126   1e-29
U39652-8|AAK82909.1|  334|Caenorhabditis elegans Protein kinase ...    81   8e-16
U42438-5|AAM75369.1|  581|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U42438-4|AAM75371.1|  617|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF016670-9|AAB66107.2|  701|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z68105-5|CAA92123.2|  729|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL009066-1|CAA15625.2|  729|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    27   8.2  

>U39652-7|AAA80405.2|  366|Caenorhabditis elegans Protein kinase
           protein 2, isoform a protein.
          Length = 366

 Score =  126 bits (304), Expect = 1e-29
 Identities = 66/144 (45%), Positives = 90/144 (62%)
 Frame = +2

Query: 191 YIQTHNIQLLLKDCIVQLCVNKPENPVSFLRQHFQKLEREQVKXXXXXXXXSEGEADGEL 370
           Y+Q HNIQ L+K+ IV LC++KP+NPV FL+ HF+KL  ++ +         + +   E 
Sbjct: 16  YVQRHNIQQLVKEAIVVLCIHKPDNPVLFLKDHFEKLNEQRAQEGGNPDAADDDDIIVE- 74

Query: 371 SPLPVPGGQLPRRRGGISAEPVTEEDATSYVKKVVPKDYKTMGALSRAIASNVLFTHLDE 550
            P    GG    RR GISAEP+ E+D T Y K V+PKD  T  +L  A+  N+LF HL+E
Sbjct: 75  -PPKRSGG----RRTGISAEPIKEDD-TEYKKVVIPKDDATRRSLESAMRKNLLFAHLEE 128

Query: 551 SERADMFDAMFPVQCLPGETVIRQ 622
            E+  M+DAMFPV+   GET+I Q
Sbjct: 129 DEQKTMYDAMFPVEKSAGETIIEQ 152


>U39652-6|ABI18144.1|  376|Caenorhabditis elegans Protein kinase
           protein 2, isoform c protein.
          Length = 376

 Score =  126 bits (304), Expect = 1e-29
 Identities = 66/144 (45%), Positives = 90/144 (62%)
 Frame = +2

Query: 191 YIQTHNIQLLLKDCIVQLCVNKPENPVSFLRQHFQKLEREQVKXXXXXXXXSEGEADGEL 370
           Y+Q HNIQ L+K+ IV LC++KP+NPV FL+ HF+KL  ++ +         + +   E 
Sbjct: 26  YVQRHNIQQLVKEAIVVLCIHKPDNPVLFLKDHFEKLNEQRAQEGGNPDAADDDDIIVE- 84

Query: 371 SPLPVPGGQLPRRRGGISAEPVTEEDATSYVKKVVPKDYKTMGALSRAIASNVLFTHLDE 550
            P    GG    RR GISAEP+ E+D T Y K V+PKD  T  +L  A+  N+LF HL+E
Sbjct: 85  -PPKRSGG----RRTGISAEPIKEDD-TEYKKVVIPKDDATRRSLESAMRKNLLFAHLEE 138

Query: 551 SERADMFDAMFPVQCLPGETVIRQ 622
            E+  M+DAMFPV+   GET+I Q
Sbjct: 139 DEQKTMYDAMFPVEKSAGETIIEQ 162


>J05220-1|AAA27980.1|  376|Caenorhabditis elegans protein (
           C.elegans cAMP-dependentprotein kinase subunit R mRNA,
           complete cds. ).
          Length = 376

 Score =  126 bits (304), Expect = 1e-29
 Identities = 66/144 (45%), Positives = 90/144 (62%)
 Frame = +2

Query: 191 YIQTHNIQLLLKDCIVQLCVNKPENPVSFLRQHFQKLEREQVKXXXXXXXXSEGEADGEL 370
           Y+Q HNIQ L+K+ IV LC++KP+NPV FL+ HF+KL  ++ +         + +   E 
Sbjct: 26  YVQRHNIQQLVKEAIVVLCIHKPDNPVLFLKDHFEKLNEQRAQEGGNPDAADDDDIIVE- 84

Query: 371 SPLPVPGGQLPRRRGGISAEPVTEEDATSYVKKVVPKDYKTMGALSRAIASNVLFTHLDE 550
            P    GG    RR GISAEP+ E+D T Y K V+PKD  T  +L  A+  N+LF HL+E
Sbjct: 85  -PPKRSGG----RRTGISAEPIKEDD-TEYKKVVIPKDDATRRSLESAMRKNLLFAHLEE 138

Query: 551 SERADMFDAMFPVQCLPGETVIRQ 622
            E+  M+DAMFPV+   GET+I Q
Sbjct: 139 DEQKTMYDAMFPVEKSAGETIIEQ 162


>U39652-8|AAK82909.1|  334|Caenorhabditis elegans Protein kinase
           protein 2, isoform b protein.
          Length = 334

 Score = 80.6 bits (190), Expect = 8e-16
 Identities = 39/72 (54%), Positives = 50/72 (69%)
 Frame = +2

Query: 407 RRGGISAEPVTEEDATSYVKKVVPKDYKTMGALSRAIASNVLFTHLDESERADMFDAMFP 586
           RR GISAEP+ E+D T Y K V+PKD  T  +L  A+  N+LF HL+E E+  M+DAMFP
Sbjct: 50  RRTGISAEPIKEDD-TEYKKVVIPKDDATRRSLESAMRKNLLFAHLEEDEQKTMYDAMFP 108

Query: 587 VQCLPGETVIRQ 622
           V+   GET+I Q
Sbjct: 109 VEKSAGETIIEQ 120


>U42438-5|AAM75369.1|  581|Caenorhabditis elegans Hypothetical
           protein C09G4.2a protein.
          Length = 581

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +2

Query: 455 SYVKKVVPKDYKTMGALSRAIASNVLFTHLDESERADMFDAMFPVQCLPGETVIRQ 622
           S  ++ +PK  +    +  A+  N    +LD ++   +  AM+PV+   G  +IRQ
Sbjct: 13  SRTQRYIPK--RAFETIGNALRLNSFLRNLDATQIEKISSAMYPVEVPAGAIIIRQ 66


>U42438-4|AAM75371.1|  617|Caenorhabditis elegans Hypothetical
           protein C09G4.2c protein.
          Length = 617

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +2

Query: 434 VTEEDATSYVKKVVPKDYKTMGALSRAIASNVLFTHLDESERADMFDAMFPVQCLPGETV 613
           ++ E      + ++ K       +  A+  N    +LD ++   +  AM+PV+   G  +
Sbjct: 40  ISSEPDIQVKRPIIGKSDAAFETIGNALRLNSFLRNLDATQIEKISSAMYPVEVPAGAII 99

Query: 614 IRQ 622
           IRQ
Sbjct: 100 IRQ 102


>AF016670-9|AAB66107.2|  701|Caenorhabditis elegans Hypothetical
           protein K02F6.9 protein.
          Length = 701

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 618 RITVSPGRHWTGNIASNISALSDS 547
           R+ VSPG HW  N A  IS   DS
Sbjct: 180 RLYVSPGPHWVYNWAMGISIYKDS 203


>Z68105-5|CAA92123.2|  729|Caenorhabditis elegans Hypothetical
           protein F13E6.2 protein.
          Length = 729

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 191 YIQTHNIQLLLKDCIVQLCVNKPENPVSFLRQHFQKL 301
           Y+Q H I  L +  +  L  ++P +P+ FL +   K+
Sbjct: 10  YLQDHRIPQLFEGLMTGLIYSRPADPLKFLEESIVKI 46


>AL009066-1|CAA15625.2|  729|Caenorhabditis elegans Hypothetical
           protein F13E6.2 protein.
          Length = 729

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 191 YIQTHNIQLLLKDCIVQLCVNKPENPVSFLRQHFQKL 301
           Y+Q H I  L +  +  L  ++P +P+ FL +   K+
Sbjct: 10  YLQDHRIPQLFEGLMTGLIYSRPADPLKFLEESIVKI 46


>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 416 GISAEPVTEEDATSYVKKVVPKDY 487
           G ++  ++ EDA  Y+KKV PK Y
Sbjct: 151 GANSISLSREDALIYIKKVYPKGY 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,285,358
Number of Sequences: 27780
Number of extensions: 226719
Number of successful extensions: 639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)