Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f02r
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,641...    31   0.74 
11_01_0287 - 2137425-2137581,2137981-2138117,2138246-2138515,213...    29   3.0  

>06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,
            6412568-6412695,6412855-6412971,6414936-6415475,
            6415554-6417344,6418359-6421407,6421765-6421823,
            6422738-6422791
          Length = 1978

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = -1

Query: 215  KFILGPLLSFSLDSETQSQLGKLLNNIAVSLQEVFEAQGTILMTSYI 75
            K  + PL  + LD +TQSQ G+LL   A++L ++F+ +G    T  +
Sbjct: 1740 KNAIAPLSMYLLDPQTQSQQGRLL--AALALGDLFQNEGLARSTDAV 1784


>11_01_0287 -
           2137425-2137581,2137981-2138117,2138246-2138515,
           2138591-2138716,2138790-2138932,2139032-2139117,
           2139574-2139752,2139941-2140210,2140282-2140380
          Length = 488

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
 Frame = -1

Query: 722 VLGLIASAVAFGENLDPADDPKNIKRPCPNFD---LNCIREYFSRNSQCQLVMGSVPD-- 558
           V+ L+ SA       D + D  N+K    + D   +  +REY   ++   +V+ ++PD  
Sbjct: 9   VIKLLTSASLLKAFNDESQDHDNLKVEVHHKDAVVIGSLREYHLDHNMAAVVVENLPDLR 68

Query: 557 PLPLNYYRVDIPNSNLTVEYHDV 489
           P+P N  +  +P+S +     D+
Sbjct: 69  PVPFNNVQKFVPHSMVVALGRDI 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,419,056
Number of Sequences: 37544
Number of extensions: 333102
Number of successful extensions: 750
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)