Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f02r
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11)          30   2.3  
SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)               29   4.1  
SB_22939| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_16010| Best HMM Match : Ribosomal_L6e_N (HMM E-Value=1.9)           29   5.4  
SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  

>SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -1

Query: 398 LKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFT--AVFPSISDLQLSNAEVFSYV-H 228
           + LA P   FK   K+    V    ++  YG + FT  A+ P    L+  NAE    V  
Sbjct: 326 IPLAYPGQYFKVLMKSSSAHVVKSLIKSTYGYVVFTAGAILPVEGPLKSVNAECLLMVEQ 385

Query: 227 EINPKF 210
           E+NP F
Sbjct: 386 EVNPDF 391


>SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11)
          Length = 502

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 512 LTVEYHDVKTRGFDTIKIIEFYINSKTEKLVLAAEVQSLKLASPK 378
           +T  +  V ++  +     EF+  SK EK++LA +  +LKL  PK
Sbjct: 11  ITTNFLSVFSKTHEVEWSTEFFQRSKNEKVLLALQEDTLKLKCPK 55


>SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
          Length = 1055

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +1

Query: 247 SALLNCRSLMLGNTAVNVRVP*STSNASLLTIGSLAFLLYLKIVFGEANFKDCTSAANTS 426
           S LLN       +  VN       SN    TI  L FLL+  +    +NF DC+  A+ +
Sbjct: 665 STLLNPSVTTFASPKVNFFTDVLLSNIVFFTICVLCFLLFNPVSLIFSNFMDCSQLADNN 724


>SB_22939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 416 AAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVD 312
           A E    K+A+ K + +YNRKAKE + R    E +
Sbjct: 21  AKEKDPRKVAAGKKLAEYNRKAKEALAREMKREAE 55


>SB_16010| Best HMM Match : Ribosomal_L6e_N (HMM E-Value=1.9)
          Length = 251

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
 Frame = -1

Query: 533 VDIPNSNLTVEYHDVKTRGFDTIKIIEFYINSKTEKLVLAAEVQSLKLASP--------- 381
           VDI  ++ T+     + R  D  K++E Y N    K V+   ++   L SP         
Sbjct: 79  VDIDCASSTLCLSGGQMRVKDIEKVLEAYKNKGQLKHVI---LEDNPLVSPPCEVVSEGV 135

Query: 380 KTIFKYNRKAKEPIVRSDALEVDYGTLTFTAVFPSISDLQL 258
           K +F+Y RK +E     +    +Y T  FT   PS+  + +
Sbjct: 136 KAVFEYLRKRQERRDLFEGYNKEYDTFAFTTKIPSLLHISI 176


>SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 986

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 719 LGLIASAVAFGENLDPADDPKNIKRPCPNFDLNCIREYFSRNSQCQLVMGSVP 561
           +G +A AVAF  NLD AD+P+    P     L C+    SR+       G  P
Sbjct: 568 IGDLAYAVAF--NLDLADNPQYYDLPVLESALECLGHVTSRSHWSTHAKGKSP 618


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,555,921
Number of Sequences: 59808
Number of extensions: 394905
Number of successful extensions: 1051
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)