Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f02f
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    28   1.3  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   1.7  
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    27   1.7  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   2.3  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.3  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    26   4.0  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   6.9  
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          25   6.9  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.1  

>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 161 CSSSRSSDRVF*CFLGHRPDPSSLQKQQQKRS 66
           C S + +D +  C+    P P++LQKQQQ  S
Sbjct: 571 CDSEKENDDLE-CYFRTPPKPTTLQKQQQSPS 601


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 92  ENLDPADDPKNIKRPCPN-FDLNCIREYFSRNSQCQLVMGSVP 217
           ++++  D+ +  K PC + F  NC++++   +  C L    VP
Sbjct: 112 DDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -3

Query: 266 NYYSVYLLCSNLKVVDLVQIPLLIDIENFLRNIHE----CSSSRSSDRVF*CFLGHRPDP 99
           NY   YL    + V  L  IPLL  + N+ + ++E    CS+   ++R+  C     P P
Sbjct: 316 NYRQSYLRIDAIAVHKLKSIPLLSTVSNWFKKMYEHRANCSALIETERLS-CLQATIPLP 374

Query: 98  S 96
           S
Sbjct: 375 S 375


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 479 LEFHSQLPMRHFLQLALWLSYC 414
           LEF+S L  RHF+ L L   +C
Sbjct: 199 LEFNSWLVFRHFVDLILMCDFC 220


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 68  IASAVAFGENLDPADDPKNIKRPCPNF 148
           I S  A+GE L   D   NI+ P P+F
Sbjct: 23  INSNYAYGEQLQSNDQYNNIQHPAPSF 49


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 287 HHDILRLNYYSVYLLCSNLKVVDLVQIPLLIDIENFLRNIHECSSSRSSDRVF 129
           H D   +   S+ L    L  V  +QIP L  +     N+H   SS+S+D  +
Sbjct: 136 HPDYPTIEELSLSLFREKLMAVKNIQIPFLNSLLQSFENLH---SSKSTDHAY 185


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = +2

Query: 164 REYFSRNSQCQLVMGSVPDPLPLNYYRVDIPNSNLTVEYHDVKTRGFDTIKIIEFYINSK 343
           REY+S++ + + + G  P P+ +   ++     +L  E H V   G  +IK   F+I+  
Sbjct: 97  REYYSKSDEIKNICGLPPGPMKVE--QIGHAIDHLVSETHTVDHLG-SSIKASFFHIDDV 153

Query: 344 TEKLVLAAEVQSLKLASP 397
             + + +  +Q     SP
Sbjct: 154 PLEWISSICMQVQSFFSP 171


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 135 GLLMFFGSSAGSKFSPKATAEAIKPKTERHRHCS--NHILKK*KKKI 1
           G +M F  + GSKFS +   + +K     H++CS   H+  K K ++
Sbjct: 136 GEIMRFLVTNGSKFSVQQLTQQVKFLRGLHKNCSEIEHLPSKVKSEL 182


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -1

Query: 460 FQCVTSYNWLFGFPIVFEN 404
           F  V ++ W++G P+ F++
Sbjct: 360 FHSVANFGWIYGMPLFFQS 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,611
Number of Sequences: 5004
Number of extensions: 53282
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)