Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f02f
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80839-8|AAB37914.1|  238|Caenorhabditis elegans Hypothetical pr...    39   0.003
AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical ...    29   2.1  
U53332-4|ABS83852.1|  215|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U53332-3|ABS83853.1|  218|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>U80839-8|AAB37914.1|  238|Caenorhabditis elegans Hypothetical
           protein ZC204.10 protein.
          Length = 238

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
 Frame = -3

Query: 281 DILRLNYYS-VYLLC-SNLKVVDLVQIPLLIDIENFLRNIHECSSSRSSDRVF*CFLGHR 108
           D+  LN++S V LL  S ++V D + I  +  +E  + N+    SS SSD +  CFL ++
Sbjct: 159 DVPLLNFFSSVELLSVSEIRVSDFIIIQNVRSLELHVVNLDYILSSNSSDILLYCFLSNK 218

Query: 107 PDPSSLQKQQQKRSNPKLK 51
            D + L KQ  K S P+L+
Sbjct: 219 -DLNLLMKQWIKGSMPRLR 236


>AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical
           protein B0205.10 protein.
          Length = 455

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 107 PDPSSLQKQQQKRSNPKLKGTGTVQTTF*RNKKKK 3
           PD + + K+ +K+ N K K     +T   +NKKKK
Sbjct: 247 PDSNDVSKKYKKKKNKKSKSKDKKKTASKKNKKKK 281


>U53332-4|ABS83852.1|  215|Caenorhabditis elegans Hypothetical
           protein F59G1.8a protein.
          Length = 215

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 386 LASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFTAVFPSISDLQL 520
           L + K +   NR+    I+ SDA E  + T+  +++FP +  LQL
Sbjct: 168 LKTAKILKARNRRQLSSIILSDAHETKFSTIAHSSLFP-LLHLQL 211


>U53332-3|ABS83853.1|  218|Caenorhabditis elegans Hypothetical
           protein F59G1.8b protein.
          Length = 218

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 386 LASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFTAVFPSISDLQL 520
           L + K +   NR+    I+ SDA E  + T+  +++FP +  LQL
Sbjct: 171 LKTAKILKARNRRQLSSIILSDAHETKFSTIAHSSLFP-LLHLQL 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,023,438
Number of Sequences: 27780
Number of extensions: 293126
Number of successful extensions: 750
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)