Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f01r
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        28   1.0  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    26   3.1  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    26   4.1  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   7.2  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    25   9.5  
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...    25   9.5  
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...    25   9.5  

>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 198 MLAGSQVVHLYYKPLQDLNEYINRELKNLPDNIQVQIK-DDLSKDGILK 55
           +L  + +VH Y      +N Y+N  L+  PD + +  + DD   +GI++
Sbjct: 82  ILTSTDIVHCYLDRYLQVNPYVNGILQLNPDVLTIASELDDERANGIIR 130


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -1

Query: 340 VNFYNTFKKRQARDLIEEKIKKYSVS*NASWSNLGTIHIFFNSGHAI 200
           +NF  T KK    DL EE IK Y       W  L +  +    GHA+
Sbjct: 318 LNFLITMKKEIGDDLSEETIKSY------LWKLLNSGRVVPGYGHAV 358


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 406 LPIFFLLGASLEFSMINWKVGEVNFYNTFKKRQ 308
           LP++ +L ASL     ++ VGE  FY T+  R+
Sbjct: 316 LPLY-MLAASLGHDRSSFLVGEAFFYGTYGARE 347


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 424 FGIYRFLPIFFLLGASLEFSMINWKVGEVNF 332
           F I  F  IF++L +SL  +  N+  GE+ F
Sbjct: 552 FNIGNFFIIFYILTSSLASTSANFLPGEILF 582


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 231 YISFSIAAMLSMLAGSQVVHLYYKPL 154
           Y++FS+   L  L   +V  L+Y PL
Sbjct: 202 YLAFSVQTSLPSLGTGEVKDLFYVPL 227


>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 234 VPKLLQLAFYETEYFLIFSSIKSRAWRFLNVL*KFTSPTFQFIIEN--SKLAPSKKKI 401
           VPKL ++  +        S  KSR W FL ++ K    T + +  N  S+  P K K+
Sbjct: 20  VPKLFRMRLFAPNE----SVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKV 73


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 234 VPKLLQLAFYETEYFLIFSSIKSRAWRFLNVL*KFTSPTFQFIIEN--SKLAPSKKKI 401
           VPKL ++  +        S  KSR W FL ++ K    T + +  N  S+  P K K+
Sbjct: 20  VPKLFRMRLFAPNE----SVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKV 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,336
Number of Sequences: 5004
Number of extensions: 46112
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)