Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f01r
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0527 + 20047027-20047281,20048169-20048390,20048996-200493...    27   9.7  
04_03_0884 + 20543084-20543638                                         27   9.7  

>12_02_0527 +
           20047027-20047281,20048169-20048390,20048996-20049354,
           20049706-20049766,20049911-20050018
          Length = 334

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 201 IAWPLLKKICIVPKLLQLAFYETEYFLIF 287
           I W L  K  IVP LL L F     +LI+
Sbjct: 19  IGWTLWAKAAIVPGLLSLVFVPLILYLIY 47


>04_03_0884 + 20543084-20543638
          Length = 184

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 454 LVNKWPGKRAFGIYRFLPIFFLLGASL 374
           L+  WPG+R  G+Y    +F L  A+L
Sbjct: 51  LIRGWPGERGAGMYALCLLFVLALAAL 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,642,458
Number of Sequences: 37544
Number of extensions: 228958
Number of successful extensions: 370
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)