Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f01f
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        28   1.1  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    26   3.5  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    26   4.6  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   8.1  

>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 347 MLAGSQVVHLYYKPLQDLNEYINRELKNLPDNIQVQIK-DDLSKDGILK 490
           +L  + +VH Y      +N Y+N  L+  PD + +  + DD   +GI++
Sbjct: 82  ILTSTDIVHCYLDRYLQVNPYVNGILQLNPDVLTIASELDDERANGIIR 130


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 205 VNFYNTFKKRQARDLIEEKIKKYSVS*NASWSNLGTIHIFFNSGHAI 345
           +NF  T KK    DL EE IK Y       W  L +  +    GHA+
Sbjct: 318 LNFLITMKKEIGDDLSEETIKSY------LWKLLNSGRVVPGYGHAV 358


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 139 LPIFFLLGASLEFSMINWKVGEVNFYNTFKKRQ 237
           LP++ +L ASL     ++ VGE  FY T+  R+
Sbjct: 316 LPLY-MLAASLGHDRSSFLVGEAFFYGTYGARE 347


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 121 FGIYRFLPIFFLLGASLEFSMINWKVGEVNF 213
           F I  F  IF++L +SL  +  N+  GE+ F
Sbjct: 552 FNIGNFFIIFYILTSSLASTSANFLPGEILF 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,837
Number of Sequences: 5004
Number of extensions: 46275
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)