Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f01f
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z37092-2|CAA85453.1|  555|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pomb...    29   3.2  
AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pomb...    29   3.2  
AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine re...    28   4.2  
AF078790-13|AAC26938.1|  123|Caenorhabditis elegans Hypothetical...    28   5.6  
AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine re...    27   9.7  

>U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical
           protein W06A11.2 protein.
          Length = 797

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 82  IQKLVNKWPGKRAFGIYRFLPIFFLLGASLEFSMINWKVGEVNFYNTFKK 231
           I+K+ N+W   RA+  + FL     L  S  F    W   +    + FKK
Sbjct: 661 IKKMPNRWEDNRAYQAFSFLAQLQFLSESHTFPRGFWSSVDTMMIDCFKK 710


>Z37092-2|CAA85453.1|  555|Caenorhabditis elegans Hypothetical
           protein F44F4.2 protein.
          Length = 555

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 49  YIKIVLMRISWIQKLVNKWPGKRAFGIYRFLPIFFL 156
           Y+ I  + + WI+  VNKW  + A G+ RF  I F+
Sbjct: 504 YLFIYRVILRWIEPYVNKWYHRAALGL-RFKSIGFI 538


>AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform b protein.
          Length = 684

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 203 SPTFQFIIENSKLAPSKKKIGRNL*IPKALFPGHLLTSF 87
           SP    I+E+ K +P K K  RNL  PK   P +++  F
Sbjct: 170 SPKKPVIVEHHK-SPQKSKAARNLFSPKKPVPDYIIPGF 207


>AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform a protein.
          Length = 741

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 203 SPTFQFIIENSKLAPSKKKIGRNL*IPKALFPGHLLTSF 87
           SP    I+E+ K +P K K  RNL  PK   P +++  F
Sbjct: 170 SPKKPVIVEHHK-SPQKSKAARNLFSPKKPVPDYIIPGF 207


>AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine
           receptor, class z protein63 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -1

Query: 323 KICIVPKLLQLAFYETEYFLIFSSIKSRAWRFLNVL*KFTSPTFQFIIENS 171
           KI  +P LL       +YFL+ S  K   W+ LN +  F S  F F I N+
Sbjct: 58  KITFIPSLLTHIIGFIDYFLLPSGDKPFYWKLLNFI-SFCS-LFAFHINNT 106


>AF078790-13|AAC26938.1|  123|Caenorhabditis elegans Hypothetical
           protein F36H12.16 protein.
          Length = 123

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 359 SQVVHLYYKPLQDLNEYINRELKNLPDNIQVQIKDDLSK 475
           SQ   ++Y  L   +  I+ +LK + DN+ V +K ++SK
Sbjct: 79  SQETDIFYSNLAAGSHRIDIDLKTMMDNVSVLLKKNVSK 117


>AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine
           receptor, class t protein26 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 470 LDHPLFELECYLVNFLV 420
           LDH LF++ CY + F+V
Sbjct: 40  LDHDLFQMSCYKIMFVV 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,751,249
Number of Sequences: 27780
Number of extensions: 235064
Number of successful extensions: 559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)