Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f01f
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   2.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.9  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +1

Query: 115 RAFGIYRFLPIFFLLGASLEFSMINWKVGEVNFYNTFKKRQARD 246
           +A  IY  +   F+  A LE++ +N+           KK+++ D
Sbjct: 302 KAIDIYLVMCFVFVFAALLEYAAVNYTYWGARAKKKSKKKESDD 345


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 139 LPIFFLLGASLEFSMINWKVGEVNFY 216
           L +F+ +   LE +MI WK  E+  +
Sbjct: 46  LLVFYEVFRYLELAMIRWKDTEIGLF 71


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 108 WKKGFWDL*VSPYFFLTW 161
           WK G WD+   P +  T+
Sbjct: 196 WKSGTWDIINVPAYLNTY 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,526
Number of Sequences: 438
Number of extensions: 3059
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)