Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e24r
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                     125   3e-29
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                     123   2e-28
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                     110   1e-24
SB_49110| Best HMM Match : N6_Mtase (HMM E-Value=2.5e-05)              30   1.8  
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                  30   1.8  
SB_23682| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                29   4.1  
SB_30631| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_39529| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score =  125 bits (302), Expect = 3e-29
 Identities = 78/246 (31%), Positives = 126/246 (51%), Gaps = 8/246 (3%)
 Frame = -2

Query: 748 INRWADEQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHVDEKT 569
           +N+W +E+T+  I   ++    +  T + + N I+F+G W  PF    +   +F      
Sbjct: 96  VNQWVEERTKKKICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSN 155

Query: 568 TIKKPTMRLLQSLFYTENEELGAKMIELPYKEPGFRMVVVLPDKIDGLPAVLEKAAEKGL 389
            ++   M       Y  +++   K++ELPY +    MV+VLPD+ +GL A  E+      
Sbjct: 156 EVEVEMMFQKSKFKYLHSDKYKCKLLELPYVDTQLSMVLVLPDETEGL-ARFEQDLTHDK 214

Query: 388 LEDVFNLSPAGR--DIELEIPKFEIRSGLDLNIILPKVGVSKIFQEPA---PGI-VKNDQ 227
           + D+FN   + R  D+E+ IPKF++ S   LN  L ++G+ K+F + A    GI +  + 
Sbjct: 215 MTDIFNSVSSQRPADVEVYIPKFKMTSEFKLNEALQELGMKKMFDQAAADFTGISLPPEH 274

Query: 226 VVVSRAFQEAFVKVDEEGATAGAFTGLIAVPTXXXXXXXXXXPFKVDHPFLFLILH-EDK 50
           + VS    +AFV+V+EEG  A A T   A+             F+ DHPFLFLI H + K
Sbjct: 275 LFVSAVLHKAFVEVNEEGTEAAAATA--AIMMMRCAIMREPLVFRADHPFLFLIQHCKSK 332

Query: 49  -ILFAG 35
            +LF G
Sbjct: 333 CVLFMG 338


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score =  123 bits (296), Expect = 2e-28
 Identities = 76/248 (30%), Positives = 119/248 (47%), Gaps = 6/248 (2%)
 Frame = -2

Query: 760 AADIINRWADEQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHV 581
           A D +NRW +++T+  IK  + E   +  T + + N ++F+G W   FN + T+   F  
Sbjct: 129 ARDTVNRWVEQKTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKT 188

Query: 580 DEKTTIKKPTMRLLQSLFYTENEELGAKMIELPYKEPGFRMVVVLPDKIDGLPAVLEKAA 401
                I+   M       Y E+  LG +++ELPY      MVV+LP+++DGL   LE + 
Sbjct: 189 TPSQEIQVQFMYQSSEFRYLESSTLGCQIVELPYAGEKLSMVVLLPNEVDGL-GKLESSL 247

Query: 400 EKGLLEDVFN--LSPAGRDIELEIPKFEIRSGLDLNIILPKVGVSKIFQEPAPGI--VKN 233
            K  L++      +    ++E+ +PKF +     L   L  +G S +F      +  +  
Sbjct: 248 NKETLQEAMTSLRNSHPEEVEVTLPKFTLTQEFSLGETLKGMGASDLFSPGKADLSGISA 307

Query: 232 DQVVVSRAFQEAFVKVDEEGATAGAFTGLIAVPTXXXXXXXXXXPFKVDHPFLFLILHED 53
             +VVS    +AFV+V+EEG  A A TG+                F  +HPFLFLI H D
Sbjct: 308 APLVVSEVVHKAFVEVNEEGTIAAAATGV----GIMLMSMPMNPVFYANHPFLFLIRHND 363

Query: 52  --KILFAG 35
              +LF G
Sbjct: 364 TGAVLFMG 371


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score =  110 bits (265), Expect = 1e-24
 Identities = 74/247 (29%), Positives = 122/247 (49%), Gaps = 9/247 (3%)
 Frame = -2

Query: 748 INRWADEQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHVDE-- 575
           +N W  +QT+G+IK  +    I+  T + + N ++F+G W   F    T    F V E  
Sbjct: 101 VNAWVHQQTKGNIKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESH 160

Query: 574 --KTTIKKPTMRLLQSLFYTENEELGAKMIELPYKEPGFRMVVVLPDKIDGLPAVLEKAA 401
             K  ++  T ++  + +Y  + ++  +++ELPY      MV++LP++  G+ + LEK+ 
Sbjct: 161 ESKIEVEMMTRKMKVNFYY--DADIKCRVVELPYSGDDTAMVIILPEEPSGIFS-LEKSI 217

Query: 400 EKGLLEDVFNLSPAGRDIELEIPKFEIRSGLDLNIILPKVGVSKIF---QEPAPGIVKND 230
           +  ++E    L      +E+ IPKF +   L+L  +L  +GVS IF   +    GI    
Sbjct: 218 DVEIMEKWRRLM-INTTVEVSIPKFRLSQKLELRSLLQDLGVSDIFDSRKADLSGISAAK 276

Query: 229 QVVVSRAFQEAFVKVDEEGATAGAFTGLIAVPTXXXXXXXXXXPFKVDHPFLFLILHE-- 56
            + VS A  +A ++V+E G  A A TG++               F  DHPFLF I H+  
Sbjct: 277 GLYVSSAIHKAHIEVNERGTVAAATTGVV----MAKRSLDMNEVFYADHPFLFSIHHKPS 332

Query: 55  DKILFAG 35
             ILF G
Sbjct: 333 SAILFLG 339


>SB_49110| Best HMM Match : N6_Mtase (HMM E-Value=2.5e-05)
          Length = 311

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -2

Query: 493 IELPYK--EPGFRMVVVLPDKIDGLPAVLEKAAEKGLLEDVFNLSPAGRDIELEIPKFEI 320
           IE  YK  +PG +M +VLPD I G P  L     + +LE+   L+     +E  +P+  +
Sbjct: 154 IEACYKLLKPGGKMAIVLPDGILGNPNTL--PVREWILENFKILASVDLAVEAFLPQVGV 211

Query: 319 RSGL 308
           ++ L
Sbjct: 212 QASL 215


>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 505 GAKMIELPYKEPGFRMVVVLPDKIDGLPAVLEKAAEK 395
           G K IEL   + G  M ++ PD++D   A++EK  E+
Sbjct: 164 GGKNIELAVMKKGEPMRILKPDEVDKFVAIIEKDKEE 200


>SB_23682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/67 (25%), Positives = 35/67 (52%)
 Frame = -2

Query: 760 AADIINRWADEQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHV 581
           A D+ +   +EQT+  +KT +  D +    +V   ++ FF+  + +P +   T + D+  
Sbjct: 178 AEDLYSTLTEEQTK-KMKTFLLADFVRHLGSVICQSLFFFRPRFRIPVDVHATADNDWIR 236

Query: 580 DEKTTIK 560
           DEK  ++
Sbjct: 237 DEKIVME 243


>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 1240

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
 Frame = -2

Query: 643  FQGHWHVPFNASETEEKDFHVDEKTTIKKPTMRLLQSLFYTENEELGAKMIELPYKEPGF 464
            F   W +PF      +K     +K  I+K   R  + +   +     +  I+  Y++ GF
Sbjct: 808  FDYKWIIPFTYYTQNDK---TKKKAWIEKDNGREGEGILQFDYNPATSGWIKANYEQHGF 864

Query: 463  RMVVVLPDKIDGLPAVLEKAAEK-------GLLEDVFNLSPAG 356
              V    +  + L   L+   EK       GLL+D FNL+ AG
Sbjct: 865  YRVNYDAENWERLKQQLDTDHEKLSAADRAGLLDDAFNLARAG 907


>SB_30631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 137 ADIFAIQTATISTVQSRP-SIPVPNSSRRQDTLCWDT 30
           AD+ A    T+ +V+++  ++P PNS  RQ  + W T
Sbjct: 26  ADVQATSEVTVVSVETQTDAVPKPNSELRQAIIAWAT 62


>SB_39529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
 Frame = +3

Query: 228 WSFLTM------PGAGSWNIFDTPTLGKIILRSS 311
           W FL M      PGA SW   D  TL K++ R S
Sbjct: 258 WLFLLMINDLHPPGAQSWKYVDDTTLAKVVPRDS 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,215,426
Number of Sequences: 59808
Number of extensions: 453251
Number of successful extensions: 1362
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)