Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e23r
         (530 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   2.9  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.8  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   8.9  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   8.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.9  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 5   STLCSIXXCWFLSKRTLMSCEPSNLTLMRL 94
           S LC I     LS R     EP +  LMRL
Sbjct: 76  SVLCEIKEKTVLSLRNTQEEEPPDPQLMRL 105


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 152 NVLERGLFC 178
           N +ERGLFC
Sbjct: 128 NCIERGLFC 136


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +2

Query: 221 LRSPTKTTCLPLNFFSSSRTSLIWIF*KAFSLG 319
           L +PT T      F+ + + +++W+      LG
Sbjct: 31  LTTPTPTDINSFYFYKTEQFTVLWVLFTMIVLG 63


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 157 DIDLCVQCYPRGL 119
           D+DL  Q +PRGL
Sbjct: 46  DLDLNAQNHPRGL 58


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 424 RNQLRPQSPTSGA 386
           R Q++PQSP+S +
Sbjct: 19  RMQIKPQSPSSSS 31


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 424 RNQLRPQSPTSGA 386
           R Q++PQSP+S +
Sbjct: 19  RMQIKPQSPSSSS 31


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,012
Number of Sequences: 336
Number of extensions: 2010
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)