Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e23r
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 172 3e-44
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 1.7
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 2.3
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 3.0
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 5.3
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 7.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.3
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces... 25 9.3
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 9.3
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 172 bits (418), Expect = 3e-44
Identities = 85/165 (51%), Positives = 118/165 (71%), Gaps = 2/165 (1%)
Frame = -3
Query: 495 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 322
KI+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 321 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 142
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 141 YNAILEDLVFPAEIVGKRIRVKLDGSQLIKVRLDKNQQXXIEHKV 7
+NAILED+VFP EI+GKR R DG + IKV LD +++K+
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKL 168
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2
Query: 203 LGLGRILRSPTKTTCLPLNFFSSSRTS 283
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = -3
Query: 333 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 241
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 175 KEATLKDIDLCVQCYPRGLGLPC 107
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 213 PKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKR 88
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 157 P*AWPLLFVSNTSFVAGLRQDLTVSN 234
P A +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 9.3
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 519 RKVVKMSTKIIK-ASGAEADSFETSISQALVELETN 415
R+ K K I +SG+E +F+T+ISQ E++T+
Sbjct: 22 RRFQKSQKKSISPSSGSELPNFKTTISQNNEEVKTS 57
>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 9.3
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -3
Query: 276 RELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIV 97
++LEK+F G + + PK + K RSR L + A + + VF
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFF-AKVPEKVFAVVTH 166
Query: 96 GKRIRV 79
G IR+
Sbjct: 167 GVDIRL 172
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 29 CWFLSKRTLMSCEPSNLTLMR 91
C FL K T SC NL L++
Sbjct: 208 CSFLPKSTYRSCRSDNLDLLK 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,653
Number of Sequences: 5004
Number of extensions: 37841
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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