Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e23r
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)              157   6e-40
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             33   0.19 
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        31   0.77 
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)                   29   3.1  
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   28   4.1  
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)                  28   4.1  
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                28   4.1  
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)                       28   5.4  
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           27   7.2  
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)           27   7.2  
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_4809| Best HMM Match : SRF-TF (HMM E-Value=5.5)                     27   9.5  
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)                    27   9.5  
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)                27   9.5  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score =  157 bits (380), Expect(2) = 6e-40
 Identities = 76/114 (66%), Positives = 94/114 (82%)
 Frame = -3

Query: 501 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 322
           S KI+K  G  A+ FE  ISQA++ELE NSD+KAQLRELYI+ AKEI++  KK+III+VP
Sbjct: 8   SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67

Query: 321 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 160
           +P+++AFQKIQ RLVRELEKKFSGKHVV V  R+ILP+P+ K+R   KQKRPRS
Sbjct: 68  VPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120



 Score = 25.0 bits (52), Expect(2) = 6e-40
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 45  LDKNQQXXIEHKVDT 1
           LDK QQ  I+HK++T
Sbjct: 122 LDKTQQTTIDHKLET 136


>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
 Frame = -3

Query: 522 SRKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIE---LH 352
           +R  +  S K         D  ++    +  +   + + K  L+E+ I ++K+ E   + 
Sbjct: 226 TRSTIARSPKHDDEKDNSGDDIDSDKEDSSGDAPHHEEKKEDLKEVVIKQSKQDEATAIK 285

Query: 351 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-----GKHVVFVGDRKILPKPSHKTRV 187
           + KS       PKLKA Q    +   +  KK        K V+       LP+ +H+   
Sbjct: 286 DSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKPVKRAKKVLNKKKMDTLPRGAHRPAS 345

Query: 186 ANKQKRPRS 160
           AN Q+RP++
Sbjct: 346 ANAQRRPQN 354


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
 Frame = -3

Query: 510  VKMSTKI--IKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHN 349
            V+MS ++  +++SG   +S E+   +     E N+ LK +L E    L +T+ +E E+ N
Sbjct: 1673 VRMSERVSVLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-N 1726

Query: 348  KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILP-KPSHKTRVANKQ 175
             K + +YV M KL++ Q        ELEK+      ++   ++I P K S  T VA  +
Sbjct: 1727 DKLMALYVNMSKLESTQGTLEEKNAELEKE------LYSAQQEIQPLKDSFNTAVAENE 1779


>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
          Length = 237

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 178 FVSNTSFVAGLRQDLTVSNKDYMFTTE 258
           F+ N SFV+ +  DLT S+ D+ + TE
Sbjct: 40  FIPNLSFVSAVLWDLTKSSSDFQWHTE 66


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 3/152 (1%)
 Frame = -3

Query: 522 SRKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKK 343
           S +V   S +++KA   + D   +   + L + + ++ +  QL  +   + +  E    K
Sbjct: 265 SSQVRSRSGRVVKAKKLDYDDVISPKFEPLKKEDNSNKISTQLLSVK-RELESGETPPSK 323

Query: 342 SIIIYVPMPKLKAFQKIQIRLVRELEKKFSG---KHVVFVGDRKILPKPSHKTRVANKQK 172
              + +P P      K  +  V E  +K      KH     + K  P+      V   + 
Sbjct: 324 IQRLELPEPDKSINSKDSLNHVEEKPRKVHKVRLKHATVPVEGKEAPQ----NNVMKSRP 379

Query: 171 RPRSRTLTSVYNAILEDLVFPAEIVGKRIRVK 76
           + R +     ++++ E  +FP E +GK+ + K
Sbjct: 380 KVRIKNCVVAHSSVFEKALFPEESLGKKYKKK 411


>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
          Length = 1552

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 465 DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 298
           + ++T ++     L  +  L+  +RELY    +E E   KKS++ ++ + PK+K  +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 413  PTSKPNFGSFTLQKLKKLNYTIRS 342
            P S  N+G FT+++LK  +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438


>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
          Length = 513

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +1

Query: 208 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 348
           LRQ L  SN        +L  L  K D+   K      +H+ DD LL
Sbjct: 170 LRQRLNSSNPSISSPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 216


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
 Frame = -1

Query: 434 WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 336
           WS+ KPTP  KPN        FG   T Q L+K N+ +  RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166


>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = -3

Query: 525  PSRKVVKMSTKII--KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELH 352
            P +  +K  ++ +    S  + +  ++  + +   L +  DL +Q RE    KA++ + +
Sbjct: 932  PDKNTIKEGSRSVPFNLSALQEEEEDSDSANSFRALPSAVDLVSQGRE-GDGKAEDEDTN 990

Query: 351  NKKSIIIYVPMPKLKAFQKIQIRLVRELE 265
            NK+    Y  M KL    +  I +V ELE
Sbjct: 991  NKEQTYDYTFMKKLPTGAEASIAMVGELE 1019


>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
          Length = 151

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = -3

Query: 327 VPMPKLKAFQKIQIRLVRELEKKFSG 250
           VP+P++ A QK++ +L R++E+K +G
Sbjct: 69  VPLPQVSAMQKVKGKL-RDMEQKLNG 93


>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/101 (19%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
 Frame = -3

Query: 474 AEADSFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKL 310
           A+  +   +  Q   E++T+ + K  +RE  ITK K +     E   +++++    + K+
Sbjct: 237 AQRKTLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKV 296

Query: 309 KAFQKIQIRLVRELEKKF---SGKHVVFVGDRKILPKPSHK 196
               + + + +RE+E++F     K+   + +R++  +   K
Sbjct: 297 AKLYEEEKQDLREMEQEFQNMEAKYNAILEERRLAAEAEKK 337


>SB_4809| Best HMM Match : SRF-TF (HMM E-Value=5.5)
          Length = 311

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
 Frame = -3

Query: 417 NSDLKAQLREL-YITKAKEIELHNKKSIIIYVP--MPKLKAFQKIQIRLVRELEKKFSGK 247
           N   K  +R + YI K  E+    K+ +++     M +++     + +L+ +  +     
Sbjct: 51  NKAKKGVIRTVGYINKGNEVISTKKRKLLMKHSRDMLEVQVISTKKRKLLMKHSRDMLEV 110

Query: 246 HVVFVGDRKILPKPSH---KTRVANKQKRPRSRTLTSVYNAILE-DLVFPAE 103
            V+F+ +RK+L K SH   K +V   +KR   + LT     +LE  ++F  E
Sbjct: 111 QVIFIKERKLLTKHSHDLVKVQVIFTKKR---KLLTKHSRDLLEVQVIFTKE 159


>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
          Length = 591

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -3

Query: 519 RKVVKMSTKIIKASGAEADSFETSISQALVEL--ETNSDLKAQLRELYITKAKE-IELHN 349
           ++ +K    +     A+ +S + ++ +   E   +   D KAQL EL + KAKE   L  
Sbjct: 202 QEFIKEQKDVAVQQKAQQESLKETLQEQEKETIQQLEEDFKAQLNELEVEKAKEQTALEE 261

Query: 348 KKSIII 331
            KS  +
Sbjct: 262 MKSFTV 267


>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
          Length = 493

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +1

Query: 208 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 348
           LRQ L  SN        +L  L  K D+   K      +H+ DD LL
Sbjct: 40  LRQRLNSSNPGISNPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,795,814
Number of Sequences: 59808
Number of extensions: 283811
Number of successful extensions: 834
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)