Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e23r
(530 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 195 1e-50
U00064-1|AAD31935.1| 845|Caenorhabditis elegans Hypothetical pr... 29 2.1
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 29 2.7
U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z81029-2|CAB02696.1| 220|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr... 27 8.4
U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical pr... 27 8.4
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein. 27 8.4
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein. 27 8.4
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 195 bits (476), Expect = 1e-50
Identities = 91/164 (55%), Positives = 125/164 (76%), Gaps = 1/164 (0%)
Frame = -3
Query: 495 KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 316
K++K+ G E +SQAL++LETN D+++QL+ELYI KE+EL NK +IIIYVP+P
Sbjct: 7 KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66
Query: 315 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVY 139
+LKAF KI LVRELEKKF G+ ++ + R+ILPKP ++ KQKRPRSRTLT+V+
Sbjct: 67 QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126
Query: 138 NAILEDLVFPAEIVGKRIRVKLDGSQLIKVRLDKNQQXXIEHKV 7
+A L++LV+PAE+VG+RIRVKLDG ++ KV LDK+ Q + HK+
Sbjct: 127 DAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKI 170
>U00064-1|AAD31935.1| 845|Caenorhabditis elegans Hypothetical
protein ZC155.3 protein.
Length = 845
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = -3
Query: 240 VFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILE---DLVFPAEIVGKRIRVKLD 70
+ V ++LPK + +A KQ+ T+ YN IL+ + V E + ++
Sbjct: 253 IHVRGEQVLPKRISENWIAKKQQLISGDQFTAAYNKILDEKNETVKKCEEEKALVMSEIG 312
Query: 69 GSQLIKVRL-DKNQQXXIEHKVDT 1
G+ VR D+ Q + +VDT
Sbjct: 313 GTNYTSVRREDRANQKSLRLRVDT 336
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -1
Query: 431 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 321
S+SK T F SF Q ++K YT S SSS R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412
>U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical
protein C27D6.1 protein.
Length = 782
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = -3
Query: 510 VKMSTKIIKASGAEADSFE---TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 340
+K + K K AEA+ ++ T S+ L ELE Q +E + K++E+E+ NK+
Sbjct: 242 LKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQL 301
Query: 339 I 337
+
Sbjct: 302 V 302
>Z81029-2|CAB02696.1| 220|Caenorhabditis elegans Hypothetical
protein C01A2.2 protein.
Length = 220
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 171 RPRSRTLTSVYNAILEDLVFPAEIVGKRIRVKLDGSQLIKVR 46
R + T+T V + L +V+ E+ R KLDGS++I R
Sbjct: 5 RSKIPTVTQVQH-FLRGIVYEQEVDYSRFETKLDGSEVITFR 45
>Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical
protein F45H11.3 protein.
Length = 738
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 409 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 495
V VGFE RLRD+GL +LS +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550
>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 89 RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 193
+LP +S K R A+ +++N + FC+LA +
Sbjct: 392 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 426
>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 89 RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 193
+LP +S K R A+ +++N + FC+LA +
Sbjct: 1105 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 1139
>Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical
protein C09D8.1c protein.
Length = 1216
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 89 RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 193
+LP +S K R A+ +++N + FC+LA +
Sbjct: 141 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 175
>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 89 RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 193
+LP +S K R A+ +++N + FC+LA +
Sbjct: 392 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 426
>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 89 RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 193
+LP +S K R A+ +++N + FC+LA +
Sbjct: 1105 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 1139
>U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical
protein T19D12.7 protein.
Length = 400
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 208 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDD 336
L+QD K +MF +F DK +D + L+F+ + DD
Sbjct: 167 LQQDFRSFQKVWMFNKTEMFSADDKTFIDSNRSLEFQVLNEDD 209
>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
Length = 1487
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 89 RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 193
+LP +S K R A+ +++N + FC+LA +
Sbjct: 392 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 426
>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
Length = 2200
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 89 RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 193
+LP +S K R A+ +++N + FC+LA +
Sbjct: 1105 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 1139
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,004,890
Number of Sequences: 27780
Number of extensions: 218014
Number of successful extensions: 690
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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