Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e23f
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)              157   6e-49
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             33   0.22 
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        31   0.89 
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)                   29   3.6  
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   28   4.8  
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)                  28   4.8  
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                28   4.8  
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)                       28   6.3  
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           27   8.3  
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)           27   8.3  
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score =  157 bits (380), Expect(2) = 6e-49
 Identities = 76/114 (66%), Positives = 94/114 (82%)
 Frame = +3

Query: 30  STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 209
           S KI+K  G  A+ FE  ISQA++ELE NSD+KAQLRELYI+ AKEI++  KK+III+VP
Sbjct: 8   SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67

Query: 210 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 371
           +P+++AFQKIQ RLVRELEKKFSGKHVV V  R+ILP+P+ K+R   KQKRPRS
Sbjct: 68  VPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120



 Score = 55.2 bits (127), Expect(2) = 6e-49
 Identities = 22/31 (70%), Positives = 28/31 (90%)
 Frame = +3

Query: 483 HLDKNQQTTIEHKVDTFQSVYKKLTGREVTF 575
           HLDK QQTTI+HK++TF +VYKKLTG++V F
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVF 151


>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
 Frame = +3

Query: 9   SRKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIE---LH 179
           +R  +  S K         D  ++    +  +   + + K  L+E+ I ++K+ E   + 
Sbjct: 226 TRSTIARSPKHDDEKDNSGDDIDSDKEDSSGDAPHHEEKKEDLKEVVIKQSKQDEATAIK 285

Query: 180 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-----GKHVVFVGDRKILPKPSHKTRV 344
           + KS       PKLKA Q    +   +  KK        K V+       LP+ +H+   
Sbjct: 286 DSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKPVKRAKKVLNKKKMDTLPRGAHRPAS 345

Query: 345 ANKQKRPRS 371
           AN Q+RP++
Sbjct: 346 ANAQRRPQN 354


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
 Frame = +3

Query: 21   VKMSTKI--IKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHN 182
            V+MS ++  +++SG   +S E+   +     E N+ LK +L E    L +T+ +E E+ N
Sbjct: 1673 VRMSERVSVLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-N 1726

Query: 183  KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILP-KPSHKTRVANKQ 356
             K + +YV M KL++ Q        ELEK+      ++   ++I P K S  T VA  +
Sbjct: 1727 DKLMALYVNMSKLESTQGTLEEKNAELEKE------LYSAQQEIQPLKDSFNTAVAENE 1779


>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -1

Query: 568 TSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIALY 389
           T+R  ++ ++DW ++  C    CW +S  T+ S     LT +++P  +  + K    A Y
Sbjct: 120 TNRCGAYYHSDWLIAIPCRRRACWTVSLITIFS---QVLTNIKVPIPAYSREKGYYTAHY 176


>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
          Length = 237

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 353 FVSNTSFVAGLRQDLTVSNKDYMFTTE 273
           F+ N SFV+ +  DLT S+ D+ + TE
Sbjct: 40  FIPNLSFVSAVLWDLTKSSSDFQWHTE 66


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 3/152 (1%)
 Frame = +3

Query: 9   SRKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKK 188
           S +V   S +++KA   + D   +   + L + + ++ +  QL  +   + +  E    K
Sbjct: 265 SSQVRSRSGRVVKAKKLDYDDVISPKFEPLKKEDNSNKISTQLLSVK-RELESGETPPSK 323

Query: 189 SIIIYVPMPKLKAFQKIQIRLVRELEKKFSG---KHVVFVGDRKILPKPSHKTRVANKQK 359
              + +P P      K  +  V E  +K      KH     + K  P+      V   + 
Sbjct: 324 IQRLELPEPDKSINSKDSLNHVEEKPRKVHKVRLKHATVPVEGKEAPQ----NNVMKSRP 379

Query: 360 RPRSRTLTSVYNAILEDLVFPAEIVGKRIRVK 455
           + R +     ++++ E  +FP E +GK+ + K
Sbjct: 380 KVRIKNCVVAHSSVFEKALFPEESLGKKYKKK 411


>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
          Length = 1552

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 66  DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 233
           + ++T ++     L  +  L+  +RELY    +E E   KKS++ ++ + PK+K  +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 118  PTSKPNFGSFTLQKLKKLNYTIRS 189
            P S  N+G FT+++LK  +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438


>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
          Length = 513

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 323 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 183
           LRQ L  SN        +L  L  K D+   K      +H+ DD LL
Sbjct: 170 LRQRLNSSNPSISSPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 216


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
 Frame = +1

Query: 97  WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 195
           WS+ KPTP  KPN        FG   T Q L+K N+ +  RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166


>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +3

Query: 6    PSRKVVKMSTKII--KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELH 179
            P +  +K  ++ +    S  + +  ++  + +   L +  DL +Q RE    KA++ + +
Sbjct: 932  PDKNTIKEGSRSVPFNLSALQEEEEDSDSANSFRALPSAVDLVSQGRE-GDGKAEDEDTN 990

Query: 180  NKKSIIIYVPMPKLKAFQKIQIRLVRELE 266
            NK+    Y  M KL    +  I +V ELE
Sbjct: 991  NKEQTYDYTFMKKLPTGAEASIAMVGELE 1019


>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 508 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 401
           V+CW L + + +  EP N  L +L ++  GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373


>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
          Length = 151

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +3

Query: 204 VPMPKLKAFQKIQIRLVRELEKKFSG 281
           VP+P++ A QK++ +L R++E+K +G
Sbjct: 69  VPLPQVSAMQKVKGKL-RDMEQKLNG 93


>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/101 (19%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
 Frame = +3

Query: 57  AEADSFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKL 221
           A+  +   +  Q   E++T+ + K  +RE  ITK K +     E   +++++    + K+
Sbjct: 237 AQRKTLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKV 296

Query: 222 KAFQKIQIRLVRELEKKF---SGKHVVFVGDRKILPKPSHK 335
               + + + +RE+E++F     K+   + +R++  +   K
Sbjct: 297 AKLYEEEKQDLREMEQEFQNMEAKYNAILEERRLAAEAEKK 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,819,426
Number of Sequences: 59808
Number of extensions: 330918
Number of successful extensions: 1022
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)