Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e23f
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   225   1e-59
U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    28   4.1  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.     27   9.5  
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.     27   9.5  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  225 bits (551), Expect = 1e-59
 Identities = 104/181 (57%), Positives = 141/181 (77%), Gaps = 1/181 (0%)
 Frame = +3

Query: 36  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 215
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 216 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVY 392
           +LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+
Sbjct: 67  QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126

Query: 393 NAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVT 572
           +A L++LV+PAE+VG+RIRVKLDG ++ KVHLDK+ QT + HK+  F SVY+KLTG++VT
Sbjct: 127 DAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVT 186

Query: 573 F 575
           F
Sbjct: 187 F 187


>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = +3

Query: 291 VFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILE---DLVFPAEIVGKRIRVKLD 461
           + V   ++LPK   +  +A KQ+       T+ YN IL+   + V   E     +  ++ 
Sbjct: 253 IHVRGEQVLPKRISENWIAKKQQLISGDQFTAAYNKILDEKNETVKKCEEEKALVMSEIG 312

Query: 462 GSQLIKVHL-DKNQQTTIEHKVDTFQ 536
           G+    V   D+  Q ++  +VDT Q
Sbjct: 313 GTNYTSVRREDRANQKSLRLRVDTSQ 338


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 100 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 210
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +3

Query: 21  VKMSTKIIKASGAEADSFE---TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 191
           +K + K  K   AEA+ ++   T  S+ L ELE       Q +E +  K++E+E+ NK+ 
Sbjct: 242 LKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQL 301

Query: 192 I 194
           +
Sbjct: 302 V 302


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 517 CSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIALYTEV 380
           C   +C F+  C ++SC      ++R      GKT+ +R  L+T+V
Sbjct: 334 CQFTICTFIGVCCVISC-----CVLRTGGGGRGKTRPNREYLHTKV 374


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 122 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 36
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical
           protein C09D8.1b protein.
          Length = 1467

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 442 RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 338
           +LP +S  K    R A+ +++N  +   FC+LA +
Sbjct: 392 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 426


>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical protein
            C09D8.1a protein.
          Length = 2180

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 442  RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 338
            +LP +S  K    R A+ +++N  +   FC+LA +
Sbjct: 1105 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 1139


>Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical
           protein C09D8.1c protein.
          Length = 1216

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 442 RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 338
           +LP +S  K    R A+ +++N  +   FC+LA +
Sbjct: 141 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 175


>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical
           protein C09D8.1b protein.
          Length = 1467

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 442 RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 338
           +LP +S  K    R A+ +++N  +   FC+LA +
Sbjct: 392 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 426


>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical protein
            C09D8.1a protein.
          Length = 2180

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 442  RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 338
            +LP +S  K    R A+ +++N  +   FC+LA +
Sbjct: 1105 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 1139


>U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical
           protein T19D12.7 protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 323 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDD 195
           L+QD     K +MF    +F   DK  +D  + L+F+  + DD
Sbjct: 167 LQQDFRSFQKVWMFNKTEMFSADDKTFIDSNRSLEFQVLNEDD 209


>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
          Length = 1487

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 442 RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 338
           +LP +S  K    R A+ +++N  +   FC+LA +
Sbjct: 392 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 426


>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
          Length = 2200

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 442  RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 338
            +LP +S  K    R A+ +++N  +   FC+LA +
Sbjct: 1105 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 1139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,484,604
Number of Sequences: 27780
Number of extensions: 252315
Number of successful extensions: 803
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)