Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e22r
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 87 3e-18
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 43 4e-05
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 43 5e-05
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 40 3e-04
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 40 4e-04
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 39 6e-04
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 35 0.010
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 34 0.018
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 33 0.042
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 33 0.056
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 31 0.23
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 29 0.52
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.52
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 29 0.91
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 29 0.91
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.6
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 27 2.1
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 27 2.8
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 26 4.8
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 26 6.4
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 26 6.4
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 26 6.4
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 26 6.4
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 25 8.5
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ... 25 8.5
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 25 8.5
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 8.5
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 25 8.5
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 8.5
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 25 8.5
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 8.5
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 86.6 bits (205), Expect = 3e-18
Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 8/233 (3%)
Frame = -3
Query: 727 AHFTPDGKSAFIASKSNHSYCIYDLVKAEAKLVQ--LPQISKRPHI--FQLSPNGKYLAT 560
A F PDGK A + + Y I+DL A+ + V Q + +P + F + P GKY+A
Sbjct: 267 ALFHPDGKRVIAAGRRKYMY-IWDLESAQVQKVSRMYGQENFQPSMERFHVDPTGKYIAL 325
Query: 559 SDCFDEVYLIDTASQELIRVLKNSTNIKSAAFNSNSSELYCFGDQGIVTVWSLCTFKSLK 380
+ L+ + + K + F S+ SE+ V +++ ++
Sbjct: 326 EGRSGHINLLHALTGQFATSFKIEGVLSDVLFTSDGSEMLVLSYGAEVWHFNVEQRSVVR 385
Query: 379 KFYDNGCVTASCITTSACGRLIATGSGEGIVNIYKTSDLMTNE----PIPLKTVSNITTK 212
++ V+ + + +A GS GIVNIY DL T+ P P+ T+ NIT
Sbjct: 386 RWQVQDGVSTTHFCLDPSNKYLAIGSKSGIVNIY---DLQTSNADAAPKPVTTLDNITFS 442
Query: 211 ITSLKFNSTTEILAACSAYYPNAVKLIHIPSYHVYQNFPKQSFNYNHIQVVNF 53
I S+ F+ +++LA S + ++L+H+PS+ V++N+P + + + F
Sbjct: 443 INSMSFSQDSQVLAIASRGKKDTLRLVHVPSFSVFRNWPTSATPLGRVTCLAF 495
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 43.2 bits (97), Expect = 4e-05
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 7/164 (4%)
Frame = -3
Query: 721 FTPDGKSAFIASKSNHSYCIYDLVKAEAKLVQLPQISKRP-----HIFQLSPNGKYLATS 557
F+ DGK F+A+ N + ++++ + + + SKR SP+GKYLAT
Sbjct: 295 FSADGK--FLATGCNRAAMVFNVETGKLITLLQEESSKREGDLYVRSVAFSPDGKYLATG 352
Query: 556 DCFDEVYLIDTASQELIRVLK-NSTNIKSAAFNSNSSELYCFGDQGIVTVWSL-CTFKSL 383
++ + D A + + R+L + I S F+ + L V +W + + L
Sbjct: 353 VEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCLWDVEAGEQKL 412
Query: 382 KKFYDNGCVTASCITTSACGRLIATGSGEGIVNIYKTSDLMTNE 251
D+G T + S G+ IA GS + ++ I+ +S + +
Sbjct: 413 ILHTDDGVTT---VMFSPDGQFIAAGSLDKVIRIWTSSGTLVEQ 453
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 42.7 bits (96), Expect = 5e-05
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 1/145 (0%)
Frame = -3
Query: 592 QLSPNGKYLATSDCFDEVYLIDTASQELIRVLKNSTN-IKSAAFNSNSSELYCFGDQGIV 416
Q S +G+ + T ++ + D S I T+ + F+ + L+ G V
Sbjct: 346 QYSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTSAVSGLCFSKRGNVLFSSSLDGSV 405
Query: 415 TVWSLCTFKSLKKFYDNGCVTASCITTSACGRLIATGSGEGIVNIYKTSDLMTNEPIPLK 236
W L +++ + F V SCI G ++ GS + I+ S + T + L+
Sbjct: 406 RAWDLIRYRNFRTFTAPSRVQFSCIAVDPSGEIVCAGSQDSF-EIFMWS-VQTGQ--LLE 461
Query: 235 TVSNITTKITSLKFNSTTEILAACS 161
T++ ++SL FNS+ +LA+ S
Sbjct: 462 TLAGHEGPVSSLSFNSSGSLLASGS 486
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 40.3 bits (90), Expect = 3e-04
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 14/175 (8%)
Frame = -3
Query: 622 PQISKRPHIFQLSPNGKYLATSDCFDEVYLIDTASQELIRVLKN--------STNIKSAA 467
P + H+ SPNG +LA S C +Y DT ++ELI+ L N S AA
Sbjct: 135 PAKASNKHV-TYSPNGNFLAVSSCNGILYFYDTQTRELIKFLTNTIASLEAESEICSKAA 193
Query: 466 FNSNSSELYCFGDQGIVTVWS----LCTFKSLKKFYDNGCVTASCITTSACGRLIATGSG 299
++ + V+V S L +K L K +G + I+ S+ G IA
Sbjct: 194 WHPKNGTFAVASTDHFVSVISPDDWLPLYKLLPKENHSG---VTDISWSSNGMYIAASFK 250
Query: 298 EGIVNIYKTSDLMTNEPIPLKTVSNITTK--ITSLKFNSTTEILAACSAYYPNAV 140
+G + I+ T +P TV + + L F + IL +C P ++
Sbjct: 251 KGGILIWDTQSHEVVVELPYSTVVALAWQPFENVLSFTTNQGILYSCPDVIPKSI 305
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 39.9 bits (89), Expect = 4e-04
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Frame = -3
Query: 721 FTPDGKSAFIASKSNHSYCIYDLVKAEAKLVQLPQISKRP------HIFQLSPNGKYLAT 560
F+ +GK ++A+ N + ++D V+ KL L + S P SP+GKYL T
Sbjct: 321 FSNNGK--YLATGCNQAANVFD-VQTGKKLFTLHEESPDPSRDLYVRTIAFSPDGKYLVT 377
Query: 559 SDCFDEVYLIDTASQELIRVLK-NSTNIKSAAFNSNSSELYCFGDQGIVTVWSLCTFKSL 383
++ L D ++Q++ V + +I S F+ N + +W + T + +
Sbjct: 378 GTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCI 437
Query: 382 KKFYDNGCVTASCITTSACGRLIATGSGEGIVNIYKTS 269
K VTA I S + IA GS + I+ ++ S
Sbjct: 438 LKLEIENGVTA--IAISPNDQFIAVGSLDQIIRVWSVS 473
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 39.1 bits (87), Expect = 6e-04
Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 2/189 (1%)
Frame = -3
Query: 718 TPDGKSAFIASKSNHSYCIYDL-VKAEAKLVQLPQISKRPHIFQLSPNGKYLATSDCFDE 542
+PD K F+A+ N +YD+ ++ L+ + +GK+LATS
Sbjct: 49 SPDKK--FLAAAGNPHVRLYDINTSSQMPLMTFEGHTNNVTAIAFHCDGKWLATSSEDGT 106
Query: 541 VYLIDTASQELIRVLKNSTNIKSAAFNSNSSELYCFGDQGIVTVWSLCTFKSLKKFYDNG 362
V + D + + R + + + + N EL G V W L +
Sbjct: 107 VKVWDMRAPSVQRNYDHKSPVNDLLIHPNQGELLSCDQSGRVRAWDLGENSCTHELIPEE 166
Query: 361 CVTASCITTSACGRLIATGSGEGIVNIYKTSDLMTNEPI-PLKTVSNITTKITSLKFNST 185
V S IT + G ++ G+ +G +++ + + P+ IT +
Sbjct: 167 DVPMSSITVGSDGSMLIAGNNKGNCYVWRMLNHQGASLLQPVVKFQAHQRYITRCVLSPD 226
Query: 184 TEILAACSA 158
+ LA CSA
Sbjct: 227 VKHLATCSA 235
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 35.1 bits (77), Expect = 0.010
Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 3/172 (1%)
Frame = -3
Query: 601 HIFQLSPNGKYLATSDCFDEVYLIDTASQE-LIRVLKNSTNIKSAAFNSNSSELYCFGDQ 425
H+ +P+ +V L +S L+++L + ++ A N + + G
Sbjct: 227 HVLHQNPHNAVEHVGHANGQVTLWSPSSTTPLVKMLTHRGPVRDLAVNRDGRYMVTAGAD 286
Query: 424 GIVTVWSLCTFKSLKKFYDNGCVTASCITTSACGRLIATGSGEGIVNIYKTSDLMTNEPI 245
++ VW L T+K L +Y A +T S G L+A G G I+K + L T +
Sbjct: 287 SLLKVWDLRTYKELHSYYTP--TPAQRLTLSDRG-LLAVGWGPH-ATIWKDA-LRTKQNF 341
Query: 244 PLKTVSNITTKITSLKFNSTTEILAA--CSAYYPNAVKLIHIPSYHVYQNFP 95
P ++ + L + +IL + V P+Y Y+N P
Sbjct: 342 PYMNHLLPSSSVVDLHYCPYEDILGIGHAKGFESIIVPGSGEPNYDSYENDP 393
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 34.3 bits (75), Expect = 0.018
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 6/145 (4%)
Frame = -3
Query: 706 KSAFIASKSNHSYCIYDLVKAEAKLVQLPQISKRP-HIFQLSPNGKYLATSDCFDEVYLI 530
KS F + I+ L K E V + S P SP+GKYLA D +V L
Sbjct: 447 KSEFCVGGEDCCVYIHTLEKGELCEVAQCKDSTAPITCLAYSPDGKYLACGDASGKVVLY 506
Query: 529 DTASQELI--RVLKNSTNIKSAAFNSNSSELYCFGDQGIVTVWSL---CTFKSLKKFYDN 365
D S+E+I R ++ I ++N+ S+ L + ++S+ + ++K +
Sbjct: 507 DANSREVITSRWAFHTGRILGMSWNAKSTHLATASLDTNIHIYSVERPMKYIAMKNAHSL 566
Query: 364 GCVTASCITTSACGRLIATGSGEGI 290
G ++ + L++TGS I
Sbjct: 567 GATQVEWVSEN---ELLSTGSDAAI 588
Score = 27.1 bits (57), Expect = 2.8
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = -3
Query: 712 DGKSAFIASKSNHSYCIYDLVKAEAKLVQLPQISKRPHIFQLSPNGKYLATSDCFDEVYL 533
D K I +N + I ++ K E Q + + + + SP+G Y+A+ D V +
Sbjct: 26 DFKGERIVYPANKAIIIREIEKQE-NCFQYNEHTAPTTVARFSPSGYYVASGDNQGNVRI 84
Query: 532 IDTASQELIRVLKN 491
D A ++ ++LKN
Sbjct: 85 WDCAGED--KILKN 96
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 33.1 bits (72), Expect = 0.042
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = -3
Query: 505 RVLKNSTNIKSAAFNSNSSELYCFGDQGIVTVWSLCTFKSLKKFYDNGCVTASCITTSAC 326
R+L + +I+ ++ +S + G + VW+ TF+ LK+ + IT
Sbjct: 129 RLLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVWNGTTFERLKRIEAHQSHVKG-ITFDPA 187
Query: 325 GRLIATGSGEGIVNIYKTSDLMTNEPI 245
G+ AT S + + +++ SD + I
Sbjct: 188 GKYFATESDDRTIKVWRVSDFSIEKTI 214
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 32.7 bits (71), Expect = 0.056
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Frame = -3
Query: 520 SQELIRVLKNSTNIKSAAFNSNSSELYCFGDQGIVTVWSLCTFKSLKKFYDNGCVTASCI 341
+Q+L+ N+ + F+ +L GD+ I+ VW + L F + T +
Sbjct: 981 NQQLM-TFNNTIAPRKLMFHQFEDQLITLGDKDIIQVWDWRRNRCLNSFKTSASATTNVT 1039
Query: 340 TTSACGR----LIATGSGEGIVNIYKTSDLMTNEPIPLKTVSN 224
L+ TGS +G + +Y+ + NE + L T N
Sbjct: 1040 DMQLLNEDDVALLMTGSSDGTIKLYRDYE---NEKVELVTSWN 1079
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 30.7 bits (66), Expect = 0.23
Identities = 29/148 (19%), Positives = 60/148 (40%)
Frame = -3
Query: 721 FTPDGKSAFIASKSNHSYCIYDLVKAEAKLVQLPQISKRPHIFQLSPNGKYLATSDCFDE 542
+TPDG+ S S + +++ + +L+ + S +G++L + D
Sbjct: 89 WTPDGRRLLTGS-STGEFTLWNGLTFNFELINQSH-DYAVRCAEWSTDGRWLISGDGGGM 146
Query: 541 VYLIDTASQELIRVLKNSTNIKSAAFNSNSSELYCFGDQGIVTVWSLCTFKSLKKFYDNG 362
V + + V + ++ AF+ N S+ D G + VW+ K +G
Sbjct: 147 VKYFEPNLNNVKIVQAHEMEVRDVAFSPNDSKFVTASDDGSLKVWNFHMSTEELKLTGHG 206
Query: 361 CVTASCITTSACGRLIATGSGEGIVNIY 278
+ + G L+A+GS + +V +
Sbjct: 207 WDVKTVDWHPSKG-LLASGSKDNLVKFW 233
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 29.5 bits (63), Expect = 0.52
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = -3
Query: 595 FQLSPNGKYLATSDCFDEVYLIDTASQELIRVLKNSTNIKSAAFNSNSSELYCFGDQGI 419
+ + NGK L SD E+YL + +++ ++K+S N++ S S + + DQ I
Sbjct: 406 YDVEMNGKSLEDSDSLSELYLTN-EEKKMASIIKDSVNVQIKLIESKLSH-FDYLDQHI 462
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.52
Identities = 24/107 (22%), Positives = 46/107 (42%)
Frame = -3
Query: 721 FTPDGKSAFIASKSNHSYCIYDLVKAEAKLVQLPQISKRPHIFQLSPNGKYLATSDCFDE 542
++ +G+ ASK + I+D+V + + I +I + SP+ +YL + C
Sbjct: 221 YSHNGRYLASASKDKTAI-IFDVVNLKRVFRLIGHIDTVAYI-RWSPDDRYLLSCSCDKS 278
Query: 541 VYLIDTASQELIRVLKNSTNIKSAAFNSNSSELYCFGDQGIVTVWSL 401
V L D + E +R K+ ++ + + +T WSL
Sbjct: 279 VILWDAFTGEKLRDYKHGFSVSCCCWLPDGLSFITGSPDCHITHWSL 325
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 28.7 bits (61), Expect = 0.91
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -3
Query: 454 SSELYCFGDQGIVTVWSLCTFKSLKKFYDNGCVTASCITTSACGRLIATGSGEGI--VNI 281
S LY + + +W + T L T SC+T R++ G+ +GI + +
Sbjct: 189 SGRLYTASEDNTIRIWDVSTGNLLTTIALPS--TPSCMTVDPSERVVYVGNEKGIIWIPL 246
Query: 280 YKTSDLMTNEPIPLKTVSNI 221
Y S +N K V+++
Sbjct: 247 YTGSSTFSNNVKEKKRVTSV 266
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 28.7 bits (61), Expect = 0.91
Identities = 23/97 (23%), Positives = 40/97 (41%)
Frame = -3
Query: 661 YDLVKAEAKLVQLPQISKRPHIFQLSPNGKYLATSDCFDEVYLIDTASQELIRVLKNSTN 482
+ L + +++ + S ++F LSP K F E Y QE + + + N
Sbjct: 50 WGLAVSPLRILGISSNSHNVNLFHLSPEFKR------FKEDYHSPWFRQETLVLEGHEHN 103
Query: 481 IKSAAFNSNSSELYCFGDQGIVTVWSLCTFKSLKKFY 371
I FNS+ + L + +W + + L KFY
Sbjct: 104 IPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFY 140
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -3
Query: 688 SKSNHSYCIYDLVKAEAKLVQLPQISKRPHIFQLSPNGKYLATSDCFDEVY 536
S+ NH Y D+V+++ +++ P ++ I NGK + +C D V+
Sbjct: 135 SRKNH-YMKADMVESQLAILEAPTADEKDVITISVENGKEQSEEECLDIVH 184
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = -3
Query: 517 QELIRVLKNSTNIKSA-AFNSNSSELYCFGDQGIVTVWSLCTFKSLK--KFYDNGCVTAS 347
+ L + K+ + +A A S+S +L ++T++ + + + +K K ++ +T
Sbjct: 51 ERLFSIKKDEDDYVTALAITSDSKKLIAAFRSRLLTIYEIPSGRRIKSMKAHETPVIT-- 108
Query: 346 CITTSACGRLIATGSGEGIVNIY 278
+T L+ATG EG+V ++
Sbjct: 109 -MTIDPTNTLLATGGAEGLVKVW 130
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = -3
Query: 370 DNGCVTASCITTSACGRLIATGSGEGIVNIYKTSDLMTNEPIPLKTVSNITTKITSLKFN 191
D V + C+ S CG GS +G+V++Y + + ++S +T++ +
Sbjct: 443 DGTSVRSVCV--SCCGNFGLIGSSKGVVDVYNMQSGIKRKSFGQSSLSG--KPVTAVMLD 498
Query: 190 STTEILAACS 161
+ IL S
Sbjct: 499 NVNRILVTAS 508
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 4.8
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Frame = -3
Query: 523 ASQELIRVLK-NSTNIKSAAFNSNSSELYCFGDQGIVTVWSLCTFKSLKKFYDNGCVTAS 347
A + RVL + + +NSN + L G+ + VW K L F+ N
Sbjct: 362 APEHYFRVLTAHRQEVCGLEWNSNENLLASGGNDNALMVWDKFEEKPLYSFH-NHIAAVK 420
Query: 346 CITTSACGR-LIATGSGEGIVNIYKTSDLMTNEPIPLKTVSNITTKITSLKFNSTTEILA 170
IT S R ++A+G G +T L + + + +++ +L ++ T
Sbjct: 421 AITWSPHQRGILASGGG----TADRTIKLWNTQRGSMLHNIDTGSQVCNLLWSKQTNEFI 476
Query: 169 ACSAYYPNAVKLIHIPS 119
+ + N V L + PS
Sbjct: 477 STHGFMENEVALWNYPS 493
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 541 VYLIDTASQELIRVLK-NSTN-IKSAAFNSNSSELYCFGDQGIVTVWSLCTFKSLK 380
+YL AS +++++ +TN + S + ++L D G++ +W + + KS++
Sbjct: 147 IYLWSAASGKVVQLHDFGATNHVTSVLWTGKGTQLAVGTDSGVIYIWDIESTKSVR 202
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -3
Query: 628 QLPQISKRPHI--FQLSPNGKYLATSDCFDEVYLIDT-ASQELI 506
QL IS H+ +SPN +YLA + +V +I + S+EL+
Sbjct: 216 QLHSISSLQHVSHISISPNARYLALYESVGKVRVISSDFSKELL 259
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 349 SCITTSACGRLIATGSGEGIVNIY 278
+C+T S G+ IA G + +V+IY
Sbjct: 368 TCVTWSPDGKFIAIGGKDDLVSIY 391
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = -3
Query: 508 IRVLKNSTNIKSAAFNSNSSELYCFGDQGIVTVWSLCTFKSLKKFYDN 365
+ +L S I++ FN Y +G V S C KK Y N
Sbjct: 219 VNLLDESGEIRATGFNDQVDAFYDILQEGSVYYISRCRVNIAKKQYTN 266
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 208 TSLKFNSTTEILAACSAYYPNAVKLIHIPSYHV 110
T + F S E L YP+ K++ P YH+
Sbjct: 261 TKISFKSLRESLKDPEYVYPDFGKMMRPPQYHI 293
>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 574 KYLATSDCFDEVYLIDTASQELI 506
KYL DCFD + D +++LI
Sbjct: 124 KYLGIEDCFDGITYCDYNAKDLI 146
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -3
Query: 355 TASCITTSACGRLIAT---GSGEGIVNIYKTSDL 263
T SCI T CG ++A + + IV+ YK+ +L
Sbjct: 426 TTSCIRTIECGYVLAASFINNDKCIVSAYKSGEL 459
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 271 SDLMTNEPIPLKTVSNITTKITSLKFN-STTEILAACSAYYPNAVKLIHIPSYHVYQNFP 95
S+ + N I K S + IT+ + S+ E + S+Y+ N K + + ++
Sbjct: 292 SEFLFNSQISPKIKSKKNSLITNYSLSTSSKERMLFLSSYFENCFKGVKSLEFKIWSRSL 351
Query: 94 KQSFNYNHI 68
++++N+ +
Sbjct: 352 RKNYNFEQL 360
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 206 CNFCCYIRYCLQRDRFIC 259
C +C +R CL D F+C
Sbjct: 295 CRYCIDLRSCLVCDSFVC 312
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -3
Query: 664 IYDLVKAEAKLVQLPQISKRPHIFQLSPNGKYLATSDCFDEVYLIDTASQELIRVLKNST 485
I+D++ + + I+ Q + N KYL S+ ++ L D ++R+ +
Sbjct: 206 IWDVLSGQCLKTLVEPINVPLSNLQFTENRKYLLVSNLNSQIRLWDYRRNRVVRIFDSHV 265
Query: 484 NIK-SAAFNSNSSE 446
N + S +++ SS+
Sbjct: 266 NTRYSMSWDCYSSK 279
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 8.5
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Frame = -3
Query: 535 LIDTASQELIRVLKNSTNIKSAAFNSNSSELYCFG-DQGIVTVWSLCTFKSLKKFY---- 371
+ D +E + ++++++ A++ +S + G D GIV C ++L K
Sbjct: 324 IADLRLEEAPSSFQVTSDVENVAWDQHSENNFFIGTDNGIVYY---CDARNLSKSVWQLQ 380
Query: 370 -DNGCVTASCITTSACGRLIATGSGEGIVNIYKTSD 266
+G ++ + S +ATGS + +V ++ TSD
Sbjct: 381 AHDGPISCLSVNPSVPS-FVATGSTDRVVKLWNTSD 415
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 8.5
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -3
Query: 715 PDGKSAFIASKSNHSYC-IYDLVKAEAKLVQLPQISKRPHIFQLSPNGKYLATSDCFDEV 539
PDG + ++S N + I+DL ++ +V L + ++ SPNG LATS D V
Sbjct: 317 PDG--SLVSSGGNDAIGRIWDLRSGKSIMV-LDEHIRQIVAMAWSPNGYQLATSSADDTV 373
Query: 538 YLIDTASQELIRVLKNSTNIKS 473
+ D L + +++ S
Sbjct: 374 KIWDLRKVSLAHTIPAHSSLVS 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,685
Number of Sequences: 5004
Number of extensions: 61921
Number of successful extensions: 188
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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