Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e22r
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.2  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   6.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.1  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -3

Query: 142 VKLIHIPSYHVYQ 104
           VK++H+PS H+++
Sbjct: 100 VKMLHVPSDHIWR 112


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -3

Query: 142 VKLIHIPSYHVYQ 104
           VK++H+PS H+++
Sbjct: 100 VKMLHVPSDHIWR 112


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
 Frame = -3

Query: 355 TASCITTSA--CGRLIATGSGEGIVNIYKTSDLMTNEPIPL------KTVSNITTKITSL 200
           TA+  TTS    G L A+ +  G+ ++  ++    NE   L         S++   + S 
Sbjct: 227 TATMATTSTPGSGSLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPNSSLQPSLASH 286

Query: 199 KFNSTTEI-LAACSA--YYPNAVKLIHIPSYHVYQNFPKQ 89
             + ++ +  +AC +   YP+    +  PSYH +Q+ P Q
Sbjct: 287 HSHLSSALGRSACHSPGVYPSTAGFLP-PSYHPHQHHPSQ 325


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 277 KTSDLMTNEPIPLKTVSNITTKITSLKFNSTTEILAACSAYYP 149
           +TS  +  EP  ++  +N+T   T +  N+  E+    + Y P
Sbjct: 555 ETSKGINAEPSNIEESNNMTDSFTRIANNTIQELYTLNNMYKP 597


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 439 NIIHCCYC*KLLILYWCYFLTPLL 510
           +++ C Y    +IL   YF+TP++
Sbjct: 3   SMLRCIYLFLSVILITSYFVTPVM 26


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 47  WRKVYYLNMI-IIEGLFGKILVNMI*GN 127
           W +VY+LNM  +   +F  I + ++ G+
Sbjct: 232 WEEVYFLNMASVFMRIFNLICMMLLIGH 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,717
Number of Sequences: 438
Number of extensions: 4133
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)