Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e22f
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 29 0.75
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 28 1.3
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 27 2.3
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual 26 4.0
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 25 7.0
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 25 7.0
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 9.2
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 9.2
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 9.2
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 28.7 bits (61), Expect = 0.75
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 361 VSNVQYTEKLKQKYRTIVGTPSWAEIKKNTDCEDD 465
V+ +QY +L+ ++ + P WA+ + T+ ED+
Sbjct: 131 VNGLQYARRLRTQFERVYPVPEWAKKQDVTEEEDE 165
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 121 KK*TIVSPLNMKRSS-RNF-KHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDNID 294
KK TI P ++ S + F + E ++ + Q++FT + + + P L+ ++
Sbjct: 281 KKSTIAKPTSIVHYSFQGFVRIESQKIRQHAEKGEQVVFTGDRVIQTNVVPFLYLTLDLP 340
Query: 295 LKPVWTDDDDGKYTAANIIPQ 357
KP++ D+ +G NIIPQ
Sbjct: 341 PKPIFQDEFEG-----NIIPQ 356
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/63 (30%), Positives = 24/63 (38%)
Frame = +1
Query: 262 KPNQELSDNIDLKPVWTDDDDGKYTAANIIPQAVSNVQYTEKLKQKYRTIVGTPSWAEIK 441
K QEL D P WT D Y I V EK K + RT+ S +
Sbjct: 381 KSKQELIDPTLEGPRWTVSDPPTYAKQTIDSNICVLVPTAEKNKLEMRTLADAASAVDTS 440
Query: 442 KNT 450
++T
Sbjct: 441 QST 443
>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 164 PETLNTRLILSKMKNHGYLKYFLPRSK 244
PET +I+S ++NHG +Y L K
Sbjct: 179 PETSPKGIIMSAVRNHGCFQYSLHNEK 205
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 139 SPLNMKRSSRNFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSD 285
+P N+ R+ N K E DEE RL ++L + ++ + + N++ D
Sbjct: 145 NPANILRNEANKKRERQEKSDEEQRL-RLLDEQIKRAYESAQNNEDNKD 192
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 163 SRNFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKP 303
+R +++I +K E RL+ +K +++K+K NQE N + P
Sbjct: 43 TRLLENDIKVMKSEFQRLTH----EKSTMLEKIKENQEKISNNKMLP 85
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 9.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 136 VSPLNMKRSSRNFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDN 288
++ LN + +R ++N V++E RLSQ+L + + L + LSD+
Sbjct: 434 LNQLNTEIEARQ-SEKLNEVQEETQRLSQLLISSQPALTEVKHLKLCLSDS 483
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 115 ICKK*TIVSPLNMKRSSRNFKHEINPVK 198
+CK T +SP+N+ R+ ++ + E+ +K
Sbjct: 305 VCKIETRMSPINLLRACQSIEQEMGRIK 332
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 170 FLELRFIFKGDTMVYFLQISNNEVFDQKTICV 75
FL IF VYFL S N+ FD C+
Sbjct: 318 FLISDHIFSEIQKVYFLPSSQNDSFDDVVACL 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,082
Number of Sequences: 5004
Number of extensions: 45911
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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