Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e22f
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0121 + 5737584-5737670,5738181-5738235,5739366-5739745           32   0.44 
03_02_0449 - 8598025-8598115,8598244-8598332                           28   7.2  
07_01_1024 - 8844393-8844482,8844579-8844850,8844924-8844983,884...    27   9.5  

>03_02_0121 + 5737584-5737670,5738181-5738235,5739366-5739745
          Length = 173

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +1

Query: 163 SRNFKHEINPVKDEESRLSQILFTKKQKLIDKL--KPNQELSD 285
           SR  K E++ +  + SRLS  +  K + + DKL  KPN+ LSD
Sbjct: 14  SRKAKQELSAIGGDISRLSSTVEEKAKWVFDKLKGKPNKSLSD 56


>03_02_0449 - 8598025-8598115,8598244-8598332
          Length = 59

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 365 VMFSTLKNLNKNIELSWEHPVGRK*RKIQIVKMM 466
           V  S LKN N    LSW H   +K + +Q+++++
Sbjct: 17  VSLSALKNTNSQHSLSWSHHKLQKAKGLQVMQII 50


>07_01_1024 -
           8844393-8844482,8844579-8844850,8844924-8844983,
           8845689-8845785,8845859-8845898,8846085-8846144,
           8847036-8847203,8847247-8847404
          Length = 314

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 278 NS*LGFNLSINFCFLVKSI*DNRDSSSLTGLISCLKFLE 162
           N+ LG+ L   FCFL++ +    D S L  ++  L+ ++
Sbjct: 54  NTFLGYELLGEFCFLIEVLPGGLDCSDLREIVCLLRLIK 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,830,033
Number of Sequences: 37544
Number of extensions: 232798
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)