Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e22f
         (640 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    29   0.16 
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    25   2.0  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    25   2.7  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    25   2.7  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   3.5  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   3.5  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    24   4.7  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.7  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    24   4.7  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    23   8.2  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   8.2  

>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 0.16
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 169 NFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTD 315
           N+   I PV +   RL+  +  +  +LID    NQ ++ N+ ++  W D
Sbjct: 34  NYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWND 82


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 169 NFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTD 315
           N+   + PV +    L+  +  K  +LID    NQ ++ N+ ++  W D
Sbjct: 34  NYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLWVEQTWYD 82


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 166 RNFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTD 315
           R +   I PV++   ++         +LI+  + NQ +  N+ L+ VW+D
Sbjct: 36  RGYNKLIRPVQNMTQKVDVRFGLAFVQLINVNEKNQIMKSNVWLRLVWSD 85


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 169 NFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTD 315
           N+   I PV +    +   L  +  +LID    +Q L+ NI L+  W D
Sbjct: 46  NYNRLIRPVSNNTDTVLVKLGLRLSQLIDLNLKDQILTTNIWLEHEWQD 94


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 169 NFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTD 315
           N+   + PV +    L   +  K  +LID    NQ ++ N+ ++  W D
Sbjct: 38  NYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYD 86


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 169 NFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTD 315
           N+   + PV +    L   +  K  +LID    NQ ++ N+ ++  W D
Sbjct: 38  NYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYD 86


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 190 PVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTD 315
           PV +E   L         ++ID  + NQ L  NI LK  W D
Sbjct: 24  PVVNESDPLQLSFGLTLMQIIDVDEKNQLLITNIWLKLEWND 65


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 190 PVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTD 315
           PV +E   L        Q++ID  + NQ L  NI L   W D
Sbjct: 41  PVANESDPLEVKFGLTLQQIIDVDEKNQLLITNIWLSLEWND 82


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 190 PVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTD 315
           PV +E   L         ++ID  + NQ L  NI LK  W D
Sbjct: 56  PVVNESDPLQLSFGLTLMQIIDVDEKNQLLVTNIWLKLEWND 97


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 190 PVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTD 315
           PV +E   L        Q++ID  + NQ L+ N  L   W D
Sbjct: 41  PVANESDPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWND 82


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 7   KFSAQHSMTSDHFLFVILNLEVKTQIVFWSK 99
           K   QH +  DH  F+IL  EV++  +  SK
Sbjct: 199 KLLKQHGIDLDHNRFLILQGEVESIAMMKSK 229


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 593,981
Number of Sequences: 2352
Number of extensions: 10497
Number of successful extensions: 27
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62723250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)