Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e22f
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical pr...    31   0.53 
Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical pr...    31   0.53 
U22832-1|AAA64507.1|  293|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z93778-6|CAB07843.2|  554|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AY523514-1|AAR98636.1|  554|Caenorhabditis elegans acetylcholine...    29   2.1  
Z95310-1|CAB08561.1|  444|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF045643-5|AAC02592.1|  607|Caenorhabditis elegans Hypothetical ...    29   3.7  
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    28   6.5  
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    28   6.5  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    28   6.5  
AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical...    28   6.5  
AL032661-1|CAA21755.1|  182|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z81137-3|CAB03471.1|  338|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical
           protein T04C12.2a protein.
          Length = 334

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 191 GLISCLKFLELRFIFKGDTMVYFLQISNNEVFDQKTICVFTSKFNITNKKWSLV 30
           GL+  LK      +  G     F+ IS   +F+ ++  +  +KF IT K+W L+
Sbjct: 100 GLLRVLKVPTSVQVLIGFISALFMAISLVALFENRSSAIQNNKFRITKKRWKLL 153


>Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical
           protein T04C12.2b protein.
          Length = 298

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 191 GLISCLKFLELRFIFKGDTMVYFLQISNNEVFDQKTICVFTSKFNITNKKWSLV 30
           GL+  LK      +  G     F+ IS   +F+ ++  +  +KF IT K+W L+
Sbjct: 64  GLLRVLKVPTSVQVLIGFISALFMAISLVALFENRSSAIQNNKFRITKKRWKLL 117


>U22832-1|AAA64507.1|  293|Caenorhabditis elegans Hypothetical
           protein C09F5.2 protein.
          Length = 293

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 477 HQFVIIFTICIFLYFRPTGCSHDSSIFLFKFFSVLNITYS 358
           H   ++ + CI  Y   TGC+ DS     KF+  L+  +S
Sbjct: 162 HLLALMMSTCILPYMEATGCTQDSPHIKLKFYIDLSWLFS 201


>Z93778-6|CAB07843.2|  554|Caenorhabditis elegans Hypothetical
           protein C31H5.3 protein.
          Length = 554

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +1

Query: 163 SRNFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTD 315
           + N+     PV++E   +  +L    Q+++D  + +Q ++ N+ L+  WTD
Sbjct: 33  AENYNKLARPVRNESEAVVVLLGMDYQQILDIDEKHQIMNSNVWLRMSWTD 83


>AY523514-1|AAR98636.1|  554|Caenorhabditis elegans acetylcholine
           receptor (63.2 kD)(acr-19) protein.
          Length = 554

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +1

Query: 163 SRNFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTD 315
           + N+     PV++E   +  +L    Q+++D  + +Q ++ N+ L+  WTD
Sbjct: 33  AENYNKLARPVRNESEAVVVLLGMDYQQILDIDEKHQIMNSNVWLRMSWTD 83


>Z95310-1|CAB08561.1|  444|Caenorhabditis elegans Hypothetical
           protein H40L08.1 protein.
          Length = 444

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
 Frame = +1

Query: 238 KQKLIDKLKPNQELSDNIDLKPVWTDDDDGKYTAANIIP------QAVSNVQYTEKLKQK 399
           ++ LID L   + +S NIDL  +    DD   +A N +           N +Y E L++ 
Sbjct: 238 RKLLIDDLSNPESVSTNIDLALIDLIADDADRSARNRVQNESRRLMEEQNREYQESLQRD 297

Query: 400 YRTIVGTPSWAEIKKNTDCEDDDK 471
              I  + S  E  K    E++ K
Sbjct: 298 LERIAKSKSEEEAAKKAQEEEEQK 321


>AF045643-5|AAC02592.1|  607|Caenorhabditis elegans Hypothetical
           protein F58H7.1 protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
 Frame = +1

Query: 103 SLLLICKK*TIVSPLNMKRSSRNFKHEINPVKDEESRLSQILFTK-KQKLIDKLKPNQEL 279
           S+L+I    T +SP  +  S+     +++ ++D E   +Q++ T  KQ   + LK + EL
Sbjct: 9   SILIILLFSTTISP-TIANSAPPDHQDVDHIEDIEVEETQVIITTTKQGPAEHLKIHIEL 67

Query: 280 SD--------NIDLKPVWTDDDDGKYTAANIIPQAVSNVQYTEKLKQKYRTIV 414
            D         +DL  +W     G+YT   + P     V++  +      T+V
Sbjct: 68  VDIEANKRVNPVDLSGLWLTITRGRYTIPFLRPDTWYGVRFRSENTINGHTVV 120


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 148 NMKRSSRNFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTDDDD 324
           N+ R +   K E+NP+KD+   L    +   Q+ I++ +     SD+I  + +  D DD
Sbjct: 673 NLLRENNRLKSEVNPLKDKYRDLEN-EYNSTQRRIEEKETQIRYSDDI-RRNIQKDLDD 729


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 148 NMKRSSRNFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTDDDD 324
           N+ R +   K E+NP+KD+   L    +   Q+ I++ +     SD+I  + +  D DD
Sbjct: 746 NLLRENNRLKSEVNPLKDKYRDLEN-EYNSTQRRIEEKETQIRYSDDI-RRNIQKDLDD 802


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 148 NMKRSSRNFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTDDDD 324
           N+ R +   K E+NP+KD+   L    +   Q+ I++ +     SD+I  + +  D DD
Sbjct: 746 NLLRENNRLKSEVNPLKDKYRDLEN-EYNSTQRRIEEKETQIRYSDDI-RRNIQKDLDD 802


>AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical
           protein Y116A8C.33 protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 160 YVSYLR-VTLWSTFYRSVTTKFLTRKQFAFLLPSLILQIKSGHWS 29
           YV +LR VTL+S +  +V  +F   K+F   L S  LQ+   + S
Sbjct: 389 YVEFLRNVTLFSNYLDNVIDRFTFEKKFNKFLDSNSLQLLKNNQS 433


>AL032661-1|CAA21755.1|  182|Caenorhabditis elegans Hypothetical
           protein Y73F4A.1 protein.
          Length = 182

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -3

Query: 350 MIFAAVYLPSSSSVHTGFKSILSDNS*LGFNLSINFCFLVKSI*DNRDSSSLTG 189
           ++FA V++PSSSSV   FK+ L   +    N  I   F   ++ +NR +S   G
Sbjct: 6   IVFAFVFIPSSSSVTCDFKNELVSMNWNVKNNKIQIHFEHNNLTENRWTSIAFG 59


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/109 (20%), Positives = 48/109 (44%)
 Frame = +1

Query: 160 SSRNFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKPVWTDDDDGKYTA 339
           S RN K +    ++ +        T+ +K  D+L+ +   + ++DL   + +  + K   
Sbjct: 185 SRRNKKIDFREFENYDEECEDEDETELEKSSDELEAHSPTTSSLDLSLCFVEKRNKKSRK 244

Query: 340 ANIIPQAVSNVQYTEKLKQKYRTIVGTPSWAEIKKNTDCEDDDKLMKTV 486
           + I   +   V   EKL  KY +++    + + +  T  E+ D + K +
Sbjct: 245 SKISESSAFEVIEKEKLVTKYTSLLNIQEFLKTEGYT-LENADIIFKNM 292


>Z81137-3|CAB03471.1|  338|Caenorhabditis elegans Hypothetical
           protein W02D9.4 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 311 LMMMMVNILQQISYLKL*VMFSTLKNL 391
           L ++ +N+L Q+ YLK+   F  LK +
Sbjct: 263 LKLLFINVLSQVIYLKMQCFFPNLKEI 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,108,115
Number of Sequences: 27780
Number of extensions: 250133
Number of successful extensions: 935
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)