Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e21r
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical ... 40 0.002
Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical p... 38 0.007
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p... 31 1.1
Z93785-1|CAB07858.1| 495|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 3.2
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain (... 28 7.4
AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain (... 28 7.4
AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain (... 28 7.4
>AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical
protein Y42H9AR.2 protein.
Length = 133
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = -2
Query: 348 LFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRR--MGSKDFVQHALELFIDFIGMFR 175
+F+ FLY + LG +L ++ D QLI+ RR + ++++ A +F+D +GMF
Sbjct: 65 IFLNWQFLYIVYAVLGALLCMFYLAIDIQLIMGGRRVEISPEEYIFAATHVFVDILGMFL 124
Query: 174 RLV 166
++
Sbjct: 125 NIL 127
>Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical
protein F40F9.2 protein.
Length = 244
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = -2
Query: 375 SMSLMTLV-NLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRR--MGSKDFVQHALE 205
S + L+ L FLY + L +LM ++ D QL++ R+ + +D++ A+E
Sbjct: 165 SFGIFALIFTLAFNWQFLYSVYSGLAALLMMFYLAIDVQLLMGGRKYELSPEDYIFAAME 224
Query: 204 LFIDFIGMFRRLVII 160
+F+D + +F L+ I
Sbjct: 225 IFLDILNIFLMLLNI 239
>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
protein C56C10.12 protein.
Length = 1599
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 395 VPPRNSQLPRSAS-IAAAEKHTNTRVVPSRAV 487
+PPR+ PRS S +A + K + T V P R+V
Sbjct: 103 IPPRSMIFPRSTSMVAESRKESTTAVAPKRSV 134
>Z93785-1|CAB07858.1| 495|Caenorhabditis elegans Hypothetical
protein W09D10.1 protein.
Length = 495
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +2
Query: 410 SQLPRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRGPMLMPDVNPNPSR*PSRKL 589
SQLP+S S A + T + SR +G +T + ++ P L+ +P S P++K
Sbjct: 140 SQLPKSLSQAQKKVGTPVVNIASRGSSSSNGHSTASAAAAAPSLLDFSDPPASTTPAKKA 199
Query: 590 V 592
V
Sbjct: 200 V 200
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Frame = +2
Query: 392 NVPPRNSQLPRSASIAAAEKHTNTRVVP-----SRAVIMIDGSTTLTYSSRGPMLMP-DV 553
N P + Q+ + A E T TRV P + I ST +YSS P P
Sbjct: 407 NAPSHSHQVDQFAEFKLVEPKTPTRVAPPPPPSAPPTIKFPISTGTSYSSTTPPTTPKPA 466
Query: 554 NPNPSR*PS 580
P PSR P+
Sbjct: 467 PPPPSRIPN 475
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Frame = +2
Query: 392 NVPPRNSQLPRSASIAAAEKHTNTRVVP-----SRAVIMIDGSTTLTYSSRGPMLMP-DV 553
N P + Q+ + A E T TRV P + I ST +YSS P P
Sbjct: 414 NAPSHSHQVDQFAEFKLVEPKTPTRVAPPPPPSAPPTIKFPISTGPSYSSTTPPTTPKPA 473
Query: 554 NPNPSR*PS 580
P PSR P+
Sbjct: 474 PPPPSRIPN 482
>AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform c protein.
Length = 784
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 609 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 496
PD + ++R G +GFG + + ++++VS PS
Sbjct: 90 PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127
>AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform a protein.
Length = 814
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 609 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 496
PD + ++R G +GFG + + ++++VS PS
Sbjct: 90 PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127
>AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform b protein.
Length = 853
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 609 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 496
PD + ++R G +GFG + + ++++VS PS
Sbjct: 129 PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,925,637
Number of Sequences: 27780
Number of extensions: 340696
Number of successful extensions: 862
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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