Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e21r
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.92 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.92 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.6  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 386 VINVPPRNSQLPRSA--SIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSR 529
           V+N+   ++ + R++  S+        + V+ +R V+  DGS T  YSS+
Sbjct: 545 VVNLKSGSNTIERNSHESVFVVPDEVPSDVLYNRLVVSEDGSETFKYSSQ 594


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 386 VINVPPRNSQLPRSA--SIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSR 529
           V+N+   ++ + R++  S+        + V+ +R V+  DGS T  YSS+
Sbjct: 545 VVNLKSGSNTIERNSHESVFVVPDEVPSDVLYNRLVVSEDGSETFKYSSQ 594


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 16  LKYFNQKIKKKTNIF 60
           L++F  KIK+K N+F
Sbjct: 264 LEHFEMKIKRKHNVF 278


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 482 AVIMIDGSTTLTYSSRGPMLMPDVNPNP 565
           A I++    T  Y++  P L   +NPNP
Sbjct: 198 APILVRARETPNYTACPPTLACPLNPNP 225


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 516 VSVVDPSIIITALLGTTLVF 457
           V ++ P+ ++  LLG  L+F
Sbjct: 294 VEIIPPTSLVVPLLGKYLIF 313


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 516 VSVVDPSIIITALLGTTLVF 457
           V ++ P+ ++  LLG  L+F
Sbjct: 294 VEIIPPTSLVVPLLGKYLIF 313


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 527 RGPMLMPDVNPN 562
           RGPM   D NPN
Sbjct: 856 RGPMTNDDFNPN 867


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,426
Number of Sequences: 438
Number of extensions: 4081
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)