Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e20r
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   3.0  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   4.0  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.0  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    25   9.3  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 388 LN*FYYSYSDRFTFLLVWMGRSLVSLLLS--HYRLK 489
           LN   YS++D +T+LL   GR L   L+S  H+ L+
Sbjct: 225 LNADIYSFADDYTYLLKLFGRLLAEELVSPKHFLLR 260


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 516 NSVLNYYNGSPSLRAKTHDYFAAETGRMVETS 611
           NS+++YY  SP  R    DY     G++ + S
Sbjct: 279 NSLISYYIHSPPFRQLPSDYLEVNDGKIPKAS 310


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 226 IFFTTYYKFEQLHFSNLIFIINGYIDNLKPISILM 122
           IFF  YY  + L F + +F I  ++ N + +S L+
Sbjct: 73  IFFFVYYCKQALEFISTVFSIIKFLLNRRKVSFLL 107


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 513 SNSVLNYYNGSPSLRAKTHDYFAAETGRMVETSVWTLN 626
           + S+++ YN +PSL AK  DY   ET  ++  +V   N
Sbjct: 693 TKSMMDVYNRNPSLYAKV-DYKNRETTNLLLLTVEAFN 729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,375
Number of Sequences: 5004
Number of extensions: 59746
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)