Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e20r
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237...    28   9.6  

>03_05_0440 + 24322332-24322388,24323478-24323615,24323654-24323736,
            24325038-24325128,24326091-24326189,24326356-24326418,
            24327182-24327259,24329354-24329543,24329812-24330065,
            24330159-24330531,24331193-24331276,24332085-24332371,
            24332495-24332542,24333194-24333220,24333951-24333987,
            24334063-24334250,24334343-24334521,24334595-24334877,
            24335481-24335717,24335798-24335988,24336552-24336561,
            24336844-24336984,24337073-24337288,24338437-24338727,
            24338852-24339025
          Length = 1272

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 768  ILIFKV*SNVVQIAAMSGAVAGVNKTQMAFRVKEHFNK 655
            +L+F V + +V++  M+  V G  K   AFR  EHF K
Sbjct: 994  VLMFSVEALLVELRHMNEEVYGRQKDGEAFRDFEHFRK 1031


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,441,024
Number of Sequences: 37544
Number of extensions: 318179
Number of successful extensions: 489
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)