Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e20f
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   7e-15
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   3e-14
SB_5348| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   1e-09
SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)                54   1e-07
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_53368| Best HMM Match : CLN3 (HMM E-Value=1.4e-07)                  32   0.34 
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.79 
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)                  29   2.4  
SB_16212| Best HMM Match : Apyrase (HMM E-Value=0)                     29   3.2  
SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5)                  29   4.2  
SB_22785| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_16151| Best HMM Match : CLN3 (HMM E-Value=2.5)                      27   9.7  

>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 29/65 (44%), Positives = 45/65 (69%)
 Frame = +3

Query: 138 NHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKDVELEKMMVG 317
           N+ C +CG  +P+W S + G++IC+ CSGVHR+LG  +S V+S+ +D W D  L+ M+  
Sbjct: 17  NNTCADCGAKHPEWASASKGIFICITCSGVHRNLGTQISVVKSLRLDTWTDERLQFMIEN 76

Query: 318 GNAKA 332
           GN K+
Sbjct: 77  GNEKS 81


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 37/106 (34%), Positives = 55/106 (51%)
 Frame = +3

Query: 111 LNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKD 290
           +  ++ L  N  C +C + +P W+S   GV  C+ECSGVHR +GVH+S V+S+T+D    
Sbjct: 89  VKQVQRLPGNDTCADCTSKDPTWLSTNLGVLTCIECSGVHRGMGVHVSRVQSITLDNIGT 148

Query: 291 VELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKI 428
            EL      GN    E  E+  DI    T   K + K   ++ + I
Sbjct: 149 AELLLAKAIGNGGFNEIMEATLDIDQKPTANSKMDEKKEFIHAKYI 194


>SB_5348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 25/42 (59%), Positives = 33/42 (78%)
 Frame = +3

Query: 303 KMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKI 428
           +M+VGGN KA+ FF SQPDI  G ++  KYN+KAAA+YR K+
Sbjct: 83  QMIVGGNDKAKAFFSSQPDIHQGQSLHDKYNSKAAALYRDKV 124


>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
          Length = 732

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 25/81 (30%), Positives = 42/81 (51%)
 Frame = +3

Query: 81  KMASPRTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFV 260
           K    +  + L  + +   N KCF+CG   P +V++T G ++C  CSG+ R L      V
Sbjct: 6   KKQDEKNLKILRDLASQQHNKKCFDCGQRGPTYVNMTIGSFVCTSCSGILRGLNPP-QRV 64

Query: 261 RSVTMDKWKDVELEKMMVGGN 323
           +S++M  +   E+E +   GN
Sbjct: 65  KSISMTSFTPQEIEYLQGAGN 85


>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = +3

Query: 231 RSLGVHLSFVRSVTMDKWKDVELEKMMVGGNAKAREFFESQ 353
           RSLGVH+S VRS+T+D W+   L+ M   GN+     +E++
Sbjct: 299 RSLGVHVSKVRSLTLDAWEPEHLKLMSELGNSLINSIYEAK 339


>SB_53368| Best HMM Match : CLN3 (HMM E-Value=1.4e-07)
          Length = 419

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -2

Query: 623 WGVTEAGVAAASILAVVANVVIRSACRQRVV 531
           WG+T AG+ AASI+ + A  V +S C+Q ++
Sbjct: 370 WGIT-AGIIAASIVGLFAEPVFKSHCQQEML 399


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 162 TLNPQWVSVTYGVWICLECSGVH 230
           ++ P   S+TYG W+C  CS  H
Sbjct: 919 SIGPGPASITYGAWVCESCSNGH 941


>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
          Length = 550

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +3

Query: 339 FFESQPDISS-GMTIPQKYNTKAAAMYRQKIAALAEGRPWSPSDYKPETIEKPQEWLQSR 515
           ++ SQ   ++  +T P+K   K   + + +  +L E RP+ P D + + +EK  E  +  
Sbjct: 105 YYSSQTTTAACHLTSPRKNMLKFLTL-KFRNQSLNEVRPFEPQDTEIQNVEKGDE--EDE 161

Query: 516 DFYSSDNTLPTSGSDNNISYHSEYGSGRYT 605
           +  S ++ + T+ ++NN     +  S + T
Sbjct: 162 EILSINDEVSTNNNNNNEESAEDLDSTKQT 191


>SB_16212| Best HMM Match : Apyrase (HMM E-Value=0)
          Length = 372

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 24  HVTGLVKSF*KDFPLSLIDKMASPRTKRKLNSIRNLDENHKCFECGTLNPQWVS 185
           HV+GL   F   +PLS   K      K ++  I +LDEN K     T+   W S
Sbjct: 50  HVSGLASKFNNTYPLSK-PKKTPLGMKYRIGIIADLDENSK---SSTMKNTWTS 99


>SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5)
          Length = 402

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 546 SAACCPKSRNRETGATPEASRSSRACNP 463
           S  C P +++R T  TP     S +C P
Sbjct: 347 STPCTPHTKDRSTSCTPHTKDKSTSCTP 374



 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 546 SAACCPKSRNRETGATPEASRSSRACNP 463
           S +C P +++R T  TP     S +C P
Sbjct: 336 STSCTPHTKDRSTPCTPHTKDRSTSCTP 363



 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 546 SAACCPKSRNRETGATPEASRSSRACNP 463
           S  C P +++R T  TP     S  C P
Sbjct: 325 STPCTPHTKDRSTSCTPHTKDRSTPCTP 352


>SB_22785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -1

Query: 228 ARPSTPSISRLR--TSLTPIEDSEFRTQSIYGSRRGCGLSSTCV 103
           +RP   S+++ +   +LT I + ++ T+S  G  R CGLS+ CV
Sbjct: 89  SRPRGLSVAKFKMAVNLTAILNLDYSTESTRG--RSCGLSAQCV 130


>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +3

Query: 453 WSPSDYKPETIEKPQEWLQS---RDFYSSDNTLPTSGS 557
           W+     P T EKPQ+W  S    D  SSD  L  S S
Sbjct: 269 WAAFSGSPPTPEKPQQWDDSSDHSDHSSSDEELDRSSS 306


>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
 Frame = +3

Query: 222 GVHRSLGVHLSFVRSVTMDKWKDVELEKMM-VGGNAKAREFFESQP-DISSGMTIPQKYN 395
           GVH+S G +    R  +  +   VELE+M+ +  NA+   +  S+   I+S   +P +  
Sbjct: 469 GVHKS-GSYPYVSRPAS--RGDGVELEEMVTMTENARLDAWRSSEAMKIASSSGVPSRVG 525

Query: 396 TKAAAMYRQKIAALAEGRPWSPSDYKPETIEKPQEWL 506
           + A +  RQ+       RP SPS   P  ++    WL
Sbjct: 526 S-ATSRARQQPPPPPPQRPASPSHSGPVPVKTADRWL 561


>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 3   SQLEVGVHVTGLVKSF*KDFPLSLIDKM--ASPRTKRKLNSIRNLDENHKCFECG 161
           SQ+ +  H T  V+   ++FP  + +K   +    K    S+  +++ HKC ECG
Sbjct: 399 SQIYLKRHKTVHVEE--RNFPCEICNKAYTSDANLKAHKRSVHCIEKKHKCEECG 451


>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 477 ETIEKPQEWLQSRDFYSSDNTLPTSGSDNNISYHSEYGSGR 599
           ET +K +EWL   + YS+   +      N I  HS    G+
Sbjct: 94  ETFDKLEEWLNEVEMYSTKKDIVKMLVGNKIDKHSSSKCGQ 134


>SB_16151| Best HMM Match : CLN3 (HMM E-Value=2.5)
          Length = 217

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 623 WGVTEAGVAAASILAVVANVVIRSACRQ 540
           WG+T AG+ AAS++ +     +++ C+Q
Sbjct: 168 WGIT-AGIIAASVVGLFVEPALKTHCQQ 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,649,775
Number of Sequences: 59808
Number of extensions: 478372
Number of successful extensions: 1499
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)