Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e18r
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)                    29   5.4  
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)
          Length = 734

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 50  SGLPITLPLYPQAMR*PEGSTVLDSVKALLYSRL*M*NKTSLS 178
           SGLP++LP+ P+A    +G  V +S+  ++ S      KTS S
Sbjct: 88  SGLPVSLPIAPEASG-DDGKEVFESLMEIVSSNCKESQKTSAS 129


>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 24/108 (22%), Positives = 46/108 (42%)
 Frame = -1

Query: 711  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGS 532
            L   L N +  A   +A  +   L++E K ++++NVV + +    +   + A++ W Q  
Sbjct: 810  LNRLLRNEISNAQGPNAAGQKNFLFQEVK-DILSNVVQRNMVRESLQAKKDAFESWRQVI 868

Query: 531  KDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLSNDVQGDDGRPAYG 388
            +  +  C P +  L   + A+ L   +D L      D   +   P  G
Sbjct: 869  EVALATC-PGDILLQDVKQAVILETLQDLLMKIAQEDALQELTSPVSG 915


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -2

Query: 737 QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 606
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,078,547
Number of Sequences: 59808
Number of extensions: 413721
Number of successful extensions: 1335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)