Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e18f
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)          23   7.4  
SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)                     27   8.8  
SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)                   27   8.8  
SB_18557| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_5215| Best HMM Match : DUF745 (HMM E-Value=1.6)                     27   8.8  

>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 24/108 (22%), Positives = 46/108 (42%)
 Frame = +2

Query: 122  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGS 301
            L   L N +  A   +A  +   L++E K ++++NVV + +    +   + A++ W Q  
Sbjct: 810  LNRLLRNEISNAQGPNAAGQKNFLFQEVK-DILSNVVQRNMVRESLQAKKDAFESWRQVI 868

Query: 302  KDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLSNDVQGDDGRPAYG 445
            +  +  C P +  L   + A+ L   +D L      D   +   P  G
Sbjct: 869  EVALATC-PGDILLQDVKQAVILETLQDLLMKIAQEDALQELTSPVSG 915


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 96  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 227
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445


>SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)
          Length = 592

 Score = 23.4 bits (48), Expect(2) = 7.4
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 22  HRTRRSKDEARYSYSMSFRGISVCCRFR 105
           +RTR++ +  R +  M+  G+++ CR+R
Sbjct: 445 YRTRQTGESTRRTRKMTSSGVAI-CRYR 471



 Score = 22.6 bits (46), Expect(2) = 7.4
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +1

Query: 196 RGEEERSHHK----CREQTDTKQQDELHGVRLSTLAPGL 300
           RGE ER HH     CR +T   +Q    GVR     PG+
Sbjct: 478 RGERERRHHPGVAICRYRT---RQVSQRGVRERRNHPGV 513


>SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 236 KLIRNNKMNCMEYAYQLWLQGSKDIVRDCF 325
           +L  NN+M    +A+  WL+G +   R C+
Sbjct: 17  RLHNNNRMLICTFAHSTWLKGRQGSSRQCY 46


>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
          Length = 720

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = -3

Query: 387 PSRLYISLIAFSAKISLNSTGKQSRTMSLEPWSQS**AYSMQFILLFRISLFTTFVMTSL 208
           P   Y        K+  +  G  S+   L  W +   A S+++ LL     F T VM S 
Sbjct: 209 PKHAYFRQTEGKGKMFADCYGHSSKVNEL--WKKISPASSLEYELLLCNETFITGVMISK 266

Query: 207 FFSSYK 190
           F +SYK
Sbjct: 267 FHTSYK 272


>SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)
          Length = 322

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = +2

Query: 203 KKSEVITNVVNKLIRNNKMNCME------YAYQLWLQGSKDIVRD 319
           KK +   ++V  L + NK N +E         Q  LQGSKDIVR+
Sbjct: 207 KKKKAAISLVESLFQENKPNPIEEECENFLKEQSGLQGSKDIVRN 251


>SB_18557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +3

Query: 147 SSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*T-AWSTPINFGSRAPRTSSGIV 323
           SSSP+T  R   +S+ T+ R   SS ++ T    ++  T  W    +  ++    SS  +
Sbjct: 96  SSSPLTQTRENSSSLLTQTRDNSSSPLTQTQDNSSSPLTQTWDNSSSPLTQTWDNSSSPL 155

Query: 324 SQLSSDLSSPKTR 362
           +Q   + SSP T+
Sbjct: 156 TQTRDNSSSPLTQ 168


>SB_5215| Best HMM Match : DUF745 (HMM E-Value=1.6)
          Length = 171

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +2

Query: 128 EQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 307
           ++L  S + A  D A+EK KHL +    +++T    ++I+  ++  +E    +  Q SKD
Sbjct: 65  KELATSAISAAKDLAIEKGKHLIDRTSVKMLTPKNVEVIK--QITGLEPNTPVITQKSKD 122

Query: 308 IV 313
           I+
Sbjct: 123 IL 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,204,565
Number of Sequences: 59808
Number of extensions: 325937
Number of successful extensions: 970
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)