Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e18f
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    30   1.5  
U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   5.9  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   5.9  
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    28   5.9  
AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 158 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 268
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 158 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 268
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 215 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 391
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 215 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 391
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical
           protein T12A2.15b protein.
          Length = 222

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 446 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 544
           D KD+ +P VS KL+AL  N +V+ K   T +N
Sbjct: 120 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 152


>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 446 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 544
           D KD+ +P VS KL+AL  N +V+ K   T +N
Sbjct: 611 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 643


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 285 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 392
           FG  APRT SG + Q S++L  S+PKT       A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182


>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
           protein C44H9.4 protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 437 AYGDGKDKTSPRVSWKLIALWENNK---VYFKILNTERNQYLVLGVGTNWNGDH 589
           ++G   +   PR  ++ I+ +   +    YF++L+ E N+Y+++    N +G H
Sbjct: 129 SWGPNFNSPKPRQVFRDISTYSYERGIRAYFRVLSAEDNKYILIACHANLHGLH 182


>Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical
           protein C38C10.3 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 297 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 392
           A + SSG+VSQ+SS  SS + R +L   ++ S
Sbjct: 91  AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +2

Query: 38   PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 205
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 206  KSEVITNVVNKLIRNNKMNCMEYAY 280
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +2

Query: 38   PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 205
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 206  KSEVITNVVNKLIRNNKMNCMEYAY 280
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 155 ADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN--KMNCMEYAYQLWLQGSKDIVRDCFP 328
           A Y S  +K +   EEK  E I N +    R    K   +    ++ L+ S+D+ RDC  
Sbjct: 29  ASYSSFSKKQQSRIEEKVLE-IKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVC 87

Query: 329 VEFRLIFA 352
           ++    FA
Sbjct: 88  IDMDAYFA 95


>AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical
           protein Y41D4B.18 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
 Frame = +3

Query: 3   SSFLGNTQDSTLQ-R*SPL*LFYVFSWH--LCMLQIPTSLTTFWRSSFTIASSSPITTVR 173
           ++F  N +  TL+    P  +  VF W+     L +  S   ++   F    + P TT  
Sbjct: 173 ATFSNNLEPDTLRLHPDPAIISRVFEWYSNATNLYVTPSQGVYYIQYFRADLNEPTTTST 232

Query: 174 LKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPINFGSRAPRTSSGIVSQLSSDLSSP 353
              A   T    A +S  + TN   TT     ST     + +P+TSS  VS  +S  SSP
Sbjct: 233 AYAAPSST----ASTSTPAPTNLPTTTGAPTNSTTNPPTATSPKTSSQPVSSSTSSTSSP 288


>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 61  NYSGLHLWSVESCVLPKNE 5
           NY+ LH W +ES + P N+
Sbjct: 60  NYNNLHYWLIESQLTPSND 78


>Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical
           protein F36F2.3b protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 132 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPI-NFGSRAPRT 308
           SFT+ASS P T +R+++ S  +  +  +  + S     +  R     T + + G +  ++
Sbjct: 285 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS-----KRDRRKKDETDVESIGEKEKKS 339

Query: 309 SSGIVSQLSSDLSSPKTRL 365
           SS  V + S D+    T++
Sbjct: 340 SSRKVPKESVDVKHKSTKI 358


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
            F36F2.3a protein.
          Length = 1128

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 132  SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPI-NFGSRAPRT 308
            SFT+ASS P T +R+++ S  +  +  +  + S     +  R     T + + G +  ++
Sbjct: 1050 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS-----KRDRRKKDETDVESIGEKEKKS 1104

Query: 309  SSGIVSQLSSDLSSPKTRL 365
            SS  V + S D+    T++
Sbjct: 1105 SSRKVPKESVDVKHKSTKI 1123


>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 263 CMEYAYQLWL---QGSKDIVRDCFPVEFRLIFA 352
           C+ Y Y+L +     +KD+ RDCF   F + FA
Sbjct: 139 CLFYVYRLTIVIYMTAKDVARDCFYSFFPITFA 171


>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 61  NYSGLHLWSVESCVLPKNE 5
           NY+ LH W +ES + P N+
Sbjct: 60  NYNNLHYWLIESQLTPSND 78


>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 61  NYSGLHLWSVESCVLPKNE 5
           NY+ LH W +ES + P N+
Sbjct: 60  NYNNLHYWLIESQLTPSND 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,531,820
Number of Sequences: 27780
Number of extensions: 234123
Number of successful extensions: 879
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)