Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e17r
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    62   7e-11
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    30   0.25 
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    28   1.3  
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    27   3.1  
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    25   7.2  
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    25   7.2  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    25   9.5  

>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 25/176 (14%)
 Frame = -2

Query: 643 IAVPTDTIYGXACSANCPLAIKKLYSIKGREAVKPVAICVTSVADLRK-----WGEA--- 488
           +A PT+T+YG    A    A+  +Y  K R A  P+ + V S+  LR+     + +A   
Sbjct: 56  VAFPTETVYGLGADARRTEAVLSIYKAKNRPADNPLIVHVASLDQLRRLLLSAYPKAKSE 115

Query: 487 ----SHISDKLLDSLL--------PGPVTVVLQXTXHLDNPFLNPSTTK----IGIRIPK 356
               +H S++++  +         PGP++++L       NP ++P  T       +R+P+
Sbjct: 116 VKNQAHDSEEIIPKVYLPLIKKFWPGPLSILLPVVDEA-NPPVSPIVTAGQKTFAVRMPQ 174

Query: 355 HDXMNTVTKIFDMPVALTSANFSNXPS-TLSIKEFEHLYPHLAAIFDGGLLSQGLE 191
           H     +  I D P+A  SAN S  PS TL+   +  L   +  I DGG    G+E
Sbjct: 175 HPVALALISISDSPLAAPSANASTRPSPTLAKHVYNDLQGKIPLILDGGACGVGVE 230


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 577 KLYSIKGREAVKPVAICVTSVADLRKWGEASHI 479
           + YSI     V P  + VT+V D ++W + +HI
Sbjct: 441 RYYSISSSSVVHPDKVHVTAVVDKKEWTDKNHI 473


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
 Frame = -2

Query: 196 LEQNRTGSTVIDLS---KNGLYKIIRKGISYDNVIKVVERYGL 77
           ++ ++TGS++I  S   K+G  +IIR  I+ +NV  ++E  G+
Sbjct: 365 IDDDQTGSSIITCSGAYKDGTLRIIRNSINIENV-ALIEMEGI 406


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +3

Query: 258 SLMDNVEGSLLKLALVNATGISNI 329
           SLMDN+  SL KL L NA G   I
Sbjct: 166 SLMDNLSESLDKLELANALGPGEI 189


>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 214 GLLSQGLEQNRTGSTVIDLSKNGLYKIIRKGISY 113
           G L Q  +QN      ++LSK   + +I KGISY
Sbjct: 38  GTLPQLPQQNVFLGLPMELSKEEAFYLIEKGISY 71


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 298 ANFSNXPSTLSIKEFEHLYPHLAAIFD 218
           A+  N P   ++KE  HL+P L    D
Sbjct: 94  ADSENGPVIKAVKEIRHLFPELVVACD 120


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 21/113 (18%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
 Frame = -2

Query: 376 IGIRIPKHDXMNTVTKIFDM-PVALTSANFSNXPSTLSIKEFEHLYPHLAAIFDGGLLSQ 200
           IG  + ++D  +   +++ M  +   +A+  +     ++ + + L       F+   +SQ
Sbjct: 384 IGEGMTRNDHGDVSNQLYAMYAIGRDAASMKSVVGEEALSQEDRLALEFLGKFEKTFISQ 443

Query: 199 GLEQNRTGSTVIDLSKNGLYKIIRKGISYDNVIKVVERYGLXKNNESENSLEI 41
           G  +NRT    +DL+ + L +I  + +      K++++Y    +  +E+S ++
Sbjct: 444 GAYENRTIFETLDLAWS-LLRIFPREMLTRIPKKILDQYYSRSSAYTESSKDV 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,126
Number of Sequences: 5004
Number of extensions: 49149
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)