Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e17r
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0053 - 5289119-5289176,5289302-5289593,5289689-5289864,529... 175 2e-44
08_02_1370 + 26457276-26457482,26457600-26457721,26458240-264582... 35 0.049
12_02_0703 + 22282219-22282430,22286054-22287620,22287751-222883... 30 1.8
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 30 1.8
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 28 5.6
08_02_0757 + 20840885-20841281,20842937-20843025,20843132-208432... 28 7.4
>03_02_0053 -
5289119-5289176,5289302-5289593,5289689-5289864,
5290272-5290493,5291261-5291337
Length = 274
Score = 175 bits (427), Expect = 2e-44
Identities = 87/191 (45%), Positives = 121/191 (63%), Gaps = 1/191 (0%)
Frame = -2
Query: 649 QVIAVPTDTIYGXACSANCPLAIKKLYSIKGREAVKPVAICVTSVADLRKWGEASHISDK 470
QVIAVPTDTIYG AC A A+ ++Y IKGR +P+AICV V D+ ++ H+
Sbjct: 83 QVIAVPTDTIYGFACDACSAEAVNRIYEIKGRVQTRPLAICVADVPDISRFAVVDHLPHG 142
Query: 469 LLDSLLPGPVTVVL-QXTXHLDNPFLNPSTTKIGIRIPKHDXMNTVTKIFDMPVALTSAN 293
LLDSLLPGPVTVVL + + LNP IG+R+P D + +++ +ALTSAN
Sbjct: 143 LLDSLLPGPVTVVLKRGNNSILERSLNPGLESIGVRVPDFDFIRAISRGAGSALALTSAN 202
Query: 292 FSNXPSTLSIKEFEHLYPHLAAIFDGGLLSQGLEQNRTGSTVIDLSKNGLYKIIRKGISY 113
S PS++++K+FE L+PH + +FDGG+L G R GST++DL G+YKI+R G S
Sbjct: 203 LSGHPSSVNVKDFEDLWPHCSYVFDGGILPSG----RAGSTIVDLITPGVYKILRDGSSR 258
Query: 112 DNVIKVVERYG 80
V+ ++G
Sbjct: 259 QETTAVLGKFG 269
>08_02_1370 +
26457276-26457482,26457600-26457721,26458240-26458293,
26458390-26458431,26458553-26458667,26458746-26458909,
26459280-26459349,26459897-26459995,26460277-26460354
Length = 316
Score = 35.1 bits (77), Expect = 0.049
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 22/194 (11%)
Frame = -2
Query: 637 VPTDTIYGXACSANCPLAIKKLYSIKG---REAVKPVAICVTSVADL--------RKWGE 491
+PTDT+Y C + ++++L IKG +A I S+ D+ R +
Sbjct: 105 IPTDTVYSIVCDLSNNDSVERLRRIKGIGDSKARYAKTILCRSLRDIDTYTTGFPRGTNQ 164
Query: 490 ASHISDKLLDSLLPGPVTVVLQXTXHLDNPFL-NPSTTK------IGIRIPKHDXMNTVT 332
+ + ++PGP T +L T L + + S+T+ +G+R+P +
Sbjct: 165 GQANIFRAVKRVIPGPYTFILPATKELPKQCIRHGSSTRYAKRRQVGVRLPDDPICEAIL 224
Query: 331 KIFDMPVALTSA-NFSNXPSTLSIKEFEHLYPH--LAAIFDGGLLSQGLEQNRTGSTVID 161
+ D P+ TS + S L +Y L I DGG + STV+D
Sbjct: 225 QNLDEPLICTSVKSLSEDEWILDPVIIADIYEQQGLDFIVDGG------TRIADPSTVVD 278
Query: 160 LSKNGLY-KIIRKG 122
++ G Y IIR+G
Sbjct: 279 MT--GSYPTIIRQG 290
>12_02_0703 +
22282219-22282430,22286054-22287620,22287751-22288371,
22288434-22288484
Length = 816
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -2
Query: 646 VIAVPTDTIYGXACSANCPLAIKKLYSIKGREAVKPVAICVTSVAD-LRKWGEA-SHISD 473
+I +DT+ + + K Y I E +K + IC T D L+K EA +
Sbjct: 533 IIFKASDTVVDDLKTTLLDVRTKSGYRISAAEILKHLYICYTKEDDNLKKLTEAMKDVLP 592
Query: 472 KLLDSLLPGP 443
K+L +LP P
Sbjct: 593 KMLKEILPSP 602
>11_01_0515 +
4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 556 REAVKPVAICVTSVADLRKWGEASHISDKLLDSLLP 449
R V+P+ +C+ S + EA ++DKLLD + P
Sbjct: 358 RRTVEPLEVCMDSDKFIPVGDEAEQVNDKLLDVIRP 393
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 28.3 bits (60), Expect = 5.6
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Frame = -2
Query: 325 FDMPVALTSANFSNXPSTLSIKEFEHLYPHLAAIFDGGLLSQGLEQNRTGSTVIDLSKNG 146
F + + SA S S +S K+ +H++ HLA F LLS + G + ++
Sbjct: 3587 FGVEGLIVSAMCSAAQSVVSPKQSQHIWHHLAMFFRDELLSWSW-RRPLGIPSVPVAAGM 3645
Query: 145 LYKIIRKGISYDNVIKVVERYGLXK----NNESENSLEINQXLQK 23
+ + + +NV V+ R L +E ENS E Q +Q+
Sbjct: 3646 INPLDFQQKVINNVEHVITRIKLISPHYLADEEENSSEPPQSVQR 3690
>08_02_0757 +
20840885-20841281,20842937-20843025,20843132-20843257,
20843617-20844333,20844420-20844630,20844739-20845238,
20845998-20846023,20846393-20846531,20846579-20846660,
20846990-20847153
Length = 816
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 262 KEFEHLYPHLAAIFDGGLLSQGLEQNRTGSTVIDLSKNGLYKIIRKGISYD 110
K+ HL P + +GGLLS+ + Q S+ ++ K K + IS+D
Sbjct: 544 KDITHLLPPTSVHEEGGLLSKPVSQEGNPSSKLESDKRCDDKSLGTKISHD 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,957,726
Number of Sequences: 37544
Number of extensions: 277430
Number of successful extensions: 539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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