Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e17r
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical...    99   2e-21
AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical...    80   2e-15
Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical pr...    34   0.076
U23081-1|AAA79846.1|  247|Caenorhabditis elegans triosephosphate...    29   2.9  
AL023828-10|CAA19447.1|  247|Caenorhabditis elegans Hypothetical...    29   2.9  
Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF016424-7|AAB65329.3|  520|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z70757-2|CAA94798.1|  611|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical pr...    27   8.7  
DQ178244-1|ABA18183.1|  521|Caenorhabditis elegans putative sulf...    27   8.7  
AY954525-1|AAX34433.1|  611|Caenorhabditis elegans anion transpo...    27   8.7  
AY887917-1|AAX34429.1|  611|Caenorhabditis elegans anion transpo...    27   8.7  

>AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18a protein.
          Length = 244

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 62/194 (31%), Positives = 104/194 (53%), Gaps = 2/194 (1%)
 Frame = -2

Query: 646 VIAVPTDTIYGXACSANCPLAIKKLYSIKGREAVKPVAICVTSVADLRKWGEASHISDKL 467
           ++A+PTDT+YG +          +LY++K R   KP+ I + S   ++     + ISD+L
Sbjct: 31  IVALPTDTLYGISTLLQYS---DRLYALKQRPYEKPLGIFLPSPTAMKLVSRQT-ISDEL 86

Query: 466 LDSLLPGPVTVVLQXTXHLDNPFLNPSTTKIGIRIPKHDXMNTVTKIFDMPVALTSANFS 287
            + LLPGPVT++ +    L   F NP    +  R+P    ++T+ K    P+A TSAN S
Sbjct: 87  ANCLLPGPVTLMFERLPCLPAEF-NPGVVNVACRVPDCPIVSTICKKLGQPLAQTSANVS 145

Query: 286 NXP-STLSIKEFEHLYPHLAAIFD-GGLLSQGLEQNRTGSTVIDLSKNGLYKIIRKGISY 113
               +  SI  F  L+P++  I D G ++S G      GST++DL+    ++I+R G + 
Sbjct: 146 GSSLNPTSIDHFRDLHPNIDLILDAGSIISSG-----EGSTIVDLTVESGFRIVRSGCAE 200

Query: 112 DNVIKVVERYGLXK 71
              ++ ++ +GL K
Sbjct: 201 KETMQKLKSFGLTK 214


>AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18b protein.
          Length = 171

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
 Frame = -2

Query: 481 ISDKLLDSLLPGPVTVVLQXTXHLDNPFLNPSTTKIGIRIPKHDXMNTVTKIFDMPVALT 302
           ISD+L + LLPGPVT++ +    L   F NP    +  R+P    ++T+ K    P+A T
Sbjct: 9   ISDELANCLLPGPVTLMFERLPCLPAEF-NPGVVNVACRVPDCPIVSTICKKLGQPLAQT 67

Query: 301 SANFSNXP-STLSIKEFEHLYPHLAAIFD-GGLLSQGLEQNRTGSTVIDLSKNGLYKIIR 128
           SAN S    +  SI  F  L+P++  I D G ++S G      GST++DL+    ++I+R
Sbjct: 68  SANVSGSSLNPTSIDHFRDLHPNIDLILDAGSIISSG-----EGSTIVDLTVESGFRIVR 122

Query: 127 KGISYDNVIKVVERYGLXK 71
            G +    ++ ++ +GL K
Sbjct: 123 SGCAEKETMQKLKSFGLTK 141


>Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical
           protein F26F2.6 protein.
          Length = 611

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 6/129 (4%)
 Frame = -2

Query: 619 YGXACSANCPLAIKKLYSIKGREAVKPVAICVTSVADLRKWGEASHI---SDKLLDSLLP 449
           Y   C ANC + + + Y+  G E VKP        A +  W E  H+    ++   + L 
Sbjct: 161 YVDGCDANCSVTMVQDYAKPGPETVKP------RDAQISNWDECMHMCYEEEECQIAYLD 214

Query: 448 GPVTVVLQXTXHLDNPFLNPSTTKIGIRIPKHDXMNTVTKIFDMPVALTSANF---SNXP 278
                 +  +      F+N S+   G R+     ++  T +F  P  L S  F   S  P
Sbjct: 215 SDAKKCVWYSSDDGLTFMNKSSADSGKRLVIKMKVDETTCLFTTPQLLDSFKFGTQSTEP 274

Query: 277 STLSIKEFE 251
           ST  I   E
Sbjct: 275 STTEISTTE 283


>U23081-1|AAA79846.1|  247|Caenorhabditis elegans triosephosphate
           isomerase protein.
          Length = 247

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -2

Query: 208 LSQGLEQNRTGSTVIDLSKNGLYKIIRKGISYDNVIKVVE---RYGLXKNNESENSLEIN 38
           + + LE+   G T  D++   L  I+ KG+S++N++   E     G  K    E + E++
Sbjct: 126 IGEKLEEREAGHTK-DVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVH 184

Query: 37  QXLQ 26
           + ++
Sbjct: 185 EWIR 188


>AL023828-10|CAA19447.1|  247|Caenorhabditis elegans Hypothetical
           protein Y17G7B.7 protein.
          Length = 247

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -2

Query: 208 LSQGLEQNRTGSTVIDLSKNGLYKIIRKGISYDNVIKVVE---RYGLXKNNESENSLEIN 38
           + + LE+   G T  D++   L  I+ KG+S++N++   E     G  K    E + E++
Sbjct: 126 IGEKLEEREAGHTK-DVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVH 184

Query: 37  QXLQ 26
           + ++
Sbjct: 185 EWIR 188


>Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical
           protein R10D12.8 protein.
          Length = 588

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 533 GHRFHCLSSFYRVKFFDSQRTVGTASXSIDC 625
           GH  HC+ +FY+ KF + Q  + TA   I C
Sbjct: 323 GHGLHCIFNFYQSKFRE-QSYLSTAIVLIGC 352


>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
            protein Y46G5A.1a protein.
          Length = 1085

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 289  SNXPSTLSIKEFEHLYPHLAAIFDGGLLSQGLEQNRTGSTVI 164
            SN P+T +     H Y H  +   G  L+Q L   R+G  V+
Sbjct: 988  SNTPTTTTHSSSSHRYQHSNSSRGGTPLAQRLRDERSGQVVL 1029


>AF016424-7|AAB65329.3|  520|Caenorhabditis elegans Hypothetical
           protein F39G3.3 protein.
          Length = 520

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 160 NL*PWSLFCSVPDLDSVTLHQIWLLNEDTDVQI 258
           N+ P++ +  +PD +S   HQ  + +ED +V++
Sbjct: 189 NVDPYNAYAGLPDYNSYDRHQPRMYHEDVEVRV 221


>Z70757-2|CAA94798.1|  611|Caenorhabditis elegans Hypothetical
           protein ZK287.2 protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/29 (34%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 373 GIRIPKHDXMNTVTKIF-DMPVALTSANF 290
           GI++P+H+ +  + +++ DM ++L S NF
Sbjct: 199 GIKLPRHEGIGMIVRMYRDMIMSLGSVNF 227


>U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical
           protein T12A2.5 protein.
          Length = 994

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 604 SANCPLAIKKLYSIKGREAVKPVAICV-TSVADLRKWGEASHISDKLLDSL 455
           +A C   I   YS  G E ++PV      S  D+RKW EA+   D L+  L
Sbjct: 389 NAKCQF-IDSFYS--GLEYIEPVIEAFGVSTQDIRKWNEATIFVDALVQLL 436


>DQ178244-1|ABA18183.1|  521|Caenorhabditis elegans putative sulfate
           transporter prestinprotein.
          Length = 521

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/29 (34%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 373 GIRIPKHDXMNTVTKIF-DMPVALTSANF 290
           GI++P+H+ +  + +++ DM ++L S NF
Sbjct: 109 GIKLPRHEGIGMIVRMYRDMIMSLGSVNF 137


>AY954525-1|AAX34433.1|  611|Caenorhabditis elegans anion
           transporter SULP-8a protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/29 (34%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 373 GIRIPKHDXMNTVTKIF-DMPVALTSANF 290
           GI++P+H+ +  + +++ DM ++L S NF
Sbjct: 199 GIKLPRHEGIGMIVRMYRDMIMSLGSVNF 227


>AY887917-1|AAX34429.1|  611|Caenorhabditis elegans anion
           transporter SULP-8b protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/29 (34%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 373 GIRIPKHDXMNTVTKIF-DMPVALTSANF 290
           GI++P+H+ +  + +++ DM ++L S NF
Sbjct: 199 GIKLPRHEGIGMIVRMYRDMIMSLGSVNF 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,587,807
Number of Sequences: 27780
Number of extensions: 267119
Number of successful extensions: 596
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)