Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e17f
(555 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9Y2Y1 Cluster: DNA-directed RNA polymerase III subunit... 105 9e-22
UniRef50_Q5KEF1 Cluster: RNA polymerase III smallest subunit, pu... 92 7e-18
UniRef50_Q9N4B7 Cluster: DNA-directed RNA polymerase subunit; n=... 92 9e-18
UniRef50_A3LW94 Cluster: DNA-directed RNA polymerase subunit; n=... 83 3e-15
UniRef50_Q98TK0 Cluster: RNA polymerase III smallest subunit; n=... 83 6e-15
UniRef50_A4RUS3 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 76 6e-13
UniRef50_Q7QQW3 Cluster: DNA-directed RNA polymerase subunit; n=... 76 6e-13
UniRef50_UPI00004998C5 Cluster: RNA polymerase III subunit; n=1;... 75 8e-13
UniRef50_Q04307 Cluster: DNA-directed RNA polymerase III subunit... 73 6e-12
UniRef50_Q2F638 Cluster: Ischemia/reperfusion inducible protein;... 71 2e-11
UniRef50_Q6EU09 Cluster: DNA-directed RNA polymerase subunit; n=... 69 6e-11
UniRef50_O13896 Cluster: DNA-directed RNA polymerase III subunit... 65 1e-09
UniRef50_Q4P5F3 Cluster: DNA-directed RNA polymerase subunit; n=... 60 4e-08
UniRef50_A2RAZ1 Cluster: Complex: hRPC11 is a small; n=5; Euroti... 59 8e-08
UniRef50_Q9YEZ3 Cluster: Archaeal transcription factor S; n=2; T... 58 2e-07
UniRef50_Q9LNK0 Cluster: DNA-directed RNA polymerase subunit; n=... 57 3e-07
UniRef50_A2EBM6 Cluster: Putative uncharacterized protein; n=1; ... 56 6e-07
UniRef50_A0RXH6 Cluster: DNA-directed RNA polymerase, subunit M/... 56 7e-07
UniRef50_Q58548 Cluster: DNA-directed RNA polymerase subunit M; ... 56 7e-07
UniRef50_A3DM83 Cluster: Transcription factor S; n=1; Staphyloth... 54 2e-06
UniRef50_Q07271 Cluster: DNA-directed RNA polymerase subunit M; ... 54 2e-06
UniRef50_Q5CYY8 Cluster: RNA polymerase III subunit C11; n=1; Cr... 54 3e-06
UniRef50_A7ASV0 Cluster: Transcription factor S-II protein, puta... 53 4e-06
UniRef50_Q7QY69 Cluster: GLP_572_32225_32536; n=1; Giardia lambl... 53 5e-06
UniRef50_Q15ES4 Cluster: RNA polymerase III subunit C11-like pro... 53 5e-06
UniRef50_Q5V537 Cluster: DNA-directed RNA-polymerase subunit M; ... 53 5e-06
UniRef50_Q2FPF9 Cluster: Transcription factor S; n=3; Euryarchae... 52 7e-06
UniRef50_Q54K02 Cluster: RNA polymerase III subunit; n=1; Dictyo... 52 9e-06
UniRef50_UPI00006C17FE Cluster: PREDICTED: similar to polymerase... 52 1e-05
UniRef50_Q8ZTX9 Cluster: DNA-directed RNA polymerase subunit M; ... 52 1e-05
UniRef50_O96159 Cluster: Transcription factor, putative; n=5; Pl... 51 2e-05
UniRef50_A7D318 Cluster: Transcription factor TFIIS; n=1; Haloru... 50 4e-05
UniRef50_Q4P1X5 Cluster: Putative uncharacterized protein; n=1; ... 50 5e-05
UniRef50_Q97AQ6 Cluster: Transcription factor [TFIIS/RPB9]; n=5;... 50 5e-05
UniRef50_A7DQB3 Cluster: Transcription termination factor Tfs; n... 49 6e-05
UniRef50_Q54YG9 Cluster: RNA polymerase II elongation factor; n=... 49 8e-05
UniRef50_Q5V5C5 Cluster: DNA-directed RNA-polymerase subunit M; ... 49 8e-05
UniRef50_Q54YF5 Cluster: RNA polymerase I subunit; n=1; Dictyost... 48 1e-04
UniRef50_Q9P9I8 Cluster: Archaeal transcription factor S; n=2; M... 48 1e-04
UniRef50_P36958 Cluster: DNA-directed RNA polymerase II subunit ... 48 1e-04
UniRef50_Q0D7N2 Cluster: Os07g0229700 protein; n=4; Magnoliophyt... 47 3e-04
UniRef50_A7Q3Y6 Cluster: Chromosome chr13 scaffold_48, whole gen... 47 3e-04
UniRef50_Q5CVE1 Cluster: Transcription elongation factor TFIIS; ... 46 6e-04
UniRef50_A6RN27 Cluster: Transcription elongation factor S-II; n... 46 6e-04
UniRef50_O27369 Cluster: DNA-directed RNA polymerase subunit M; ... 46 6e-04
UniRef50_Q9ZVH8 Cluster: Putative elongation factor; n=5; Magnol... 46 8e-04
UniRef50_Q8L5V0 Cluster: RNA Polymerase II subunit 14.5 kD, puta... 46 8e-04
UniRef50_Q2U4B9 Cluster: Transcription elongation factor TFIIS/C... 45 0.001
UniRef50_A4S3C9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 44 0.002
UniRef50_Q4QDH9 Cluster: RNA polymerase III C11 subunit, putativ... 44 0.002
UniRef50_Q22CT1 Cluster: Transcription factor S-II; n=1; Tetrahy... 44 0.002
UniRef50_Q8PX24 Cluster: DNA-directed RNA polymerase subunit M; ... 44 0.002
UniRef50_A0B7Y7 Cluster: Transcription factor TFIIS; n=1; Methan... 44 0.002
UniRef50_Q5YFI0 Cluster: Transcription elongation factor TFIIS; ... 44 0.003
UniRef50_Q9GZ09 Cluster: Transcription elongation factor TFIIS; ... 44 0.003
UniRef50_Q8SS71 Cluster: TRANSCRIPTION ELONGATION FACTOR SII; n=... 44 0.003
UniRef50_Q74N12 Cluster: NEQ377; n=1; Nanoarchaeum equitans|Rep:... 42 0.003
UniRef50_Q01C33 Cluster: RNA polymerase III subunit C11; n=2; Os... 43 0.004
UniRef50_Q5CUJ8 Cluster: Putative uncharacterized protein; n=1; ... 43 0.004
UniRef50_Q9YPH8 Cluster: Transcription elongation factor SII; n=... 43 0.006
UniRef50_Q6GZP4 Cluster: Transcription elongation factor SII; n=... 43 0.006
UniRef50_A0CQT2 Cluster: Chromosome undetermined scaffold_24, wh... 43 0.006
UniRef50_Q8SSB3 Cluster: DNA-DIRECTED RNA POLYMERASE III 12.5kDa... 43 0.006
UniRef50_UPI0000E47C8A Cluster: PREDICTED: similar to ENSANGP000... 42 0.007
UniRef50_O17587 Cluster: Putative uncharacterized protein; n=2; ... 42 0.007
UniRef50_Q0W2J5 Cluster: Archaeal transcription factor S; n=4; E... 42 0.007
UniRef50_Q5UQS8 Cluster: TFII-like transcription factor; n=1; Ac... 42 0.010
UniRef50_Q4N8B9 Cluster: Transcription elongation factor SII, pu... 42 0.010
UniRef50_Q4DRW2 Cluster: Transcription elongation factor, putati... 42 0.010
UniRef50_P52652 Cluster: Putative transcription elongation facto... 42 0.010
UniRef50_Q0UVI1 Cluster: Predicted protein; n=1; Phaeosphaeria n... 42 0.013
UniRef50_A3LRC5 Cluster: Predicted protein; n=5; Saccharomycetal... 42 0.013
UniRef50_Q586X9 Cluster: Transcription elongation factor S-II, p... 41 0.017
UniRef50_A0E7M3 Cluster: Chromosome undetermined scaffold_81, wh... 41 0.017
UniRef50_UPI00006CB60F Cluster: hypothetical protein TTHERM_0044... 41 0.022
UniRef50_Q8GSD5 Cluster: Putative RNA Polymerase II subunit 14.5... 41 0.022
UniRef50_Q4CXN7 Cluster: Transcription elongation factor S-II, p... 41 0.022
UniRef50_Q5DAX2 Cluster: SJCHGC05867 protein; n=1; Schistosoma j... 40 0.029
UniRef50_Q4UH96 Cluster: Transcription elongation factor, putati... 40 0.029
UniRef50_Q4DC35 Cluster: DNA-directed RNA polymerase subunit; n=... 40 0.029
UniRef50_A7ARU9 Cluster: Putative uncharacterized protein; n=1; ... 40 0.029
UniRef50_P07273 Cluster: Transcription elongation factor S-II; n... 40 0.029
UniRef50_P49373 Cluster: Transcription elongation factor S-II; n... 40 0.029
UniRef50_Q387Z6 Cluster: RNA polymerase III C11 subunit, putativ... 40 0.039
UniRef50_A2EHZ7 Cluster: Putative uncharacterized protein; n=1; ... 40 0.039
UniRef50_A7TNI5 Cluster: Putative uncharacterized protein; n=1; ... 40 0.039
UniRef50_A1RXU9 Cluster: Transcription termination factor Tfs; n... 40 0.039
UniRef50_Q9DGD2 Cluster: Transcription elongation factor XSII-K1... 40 0.051
UniRef50_A6QWZ4 Cluster: Predicted protein; n=1; Ajellomyces cap... 40 0.051
UniRef50_O75764 Cluster: Transcription elongation factor A prote... 40 0.051
UniRef50_UPI0000499ED2 Cluster: hypothetical protein 230.t00020;... 39 0.068
UniRef50_Q6P0U5 Cluster: Zgc:77732; n=4; Clupeocephala|Rep: Zgc:... 39 0.068
UniRef50_Q4TIF2 Cluster: Chromosome undetermined SCAF2195, whole... 39 0.068
UniRef50_Q6C6I8 Cluster: Similar to DEHA0C15686g Debaryomyces ha... 39 0.068
UniRef50_A1CED1 Cluster: DNA-directed RNA polymerase subunit; n=... 39 0.068
UniRef50_P23193 Cluster: Transcription elongation factor A prote... 39 0.068
UniRef50_O94703 Cluster: DNA-directed RNA polymerase I subunit R... 39 0.068
UniRef50_Q9LU97 Cluster: Similarity to transcription-associated ... 39 0.090
UniRef50_Q1JT63 Cluster: Transcription elongation factor s-II, p... 39 0.090
UniRef50_Q9P1U0 Cluster: DNA-directed RNA polymerase I subunit R... 39 0.090
UniRef50_Q4P4T4 Cluster: Putative uncharacterized protein; n=1; ... 38 0.12
UniRef50_UPI000150AA00 Cluster: transcription factor S-II; n=1; ... 38 0.16
UniRef50_UPI00005A4643 Cluster: PREDICTED: similar to Transcript... 38 0.16
UniRef50_A7AWE5 Cluster: Transcription factor S-II (TFIIS)and tr... 38 0.16
UniRef50_A6SAU7 Cluster: Putative uncharacterized protein; n=2; ... 38 0.16
UniRef50_Q15560 Cluster: Transcription elongation factor A prote... 38 0.16
UniRef50_P32529 Cluster: DNA-directed RNA polymerase I subunit R... 38 0.16
UniRef50_A5JZL5 Cluster: Transcription elongation factor, putati... 38 0.21
UniRef50_Q9LNT2 Cluster: T20H2.16 protein; n=1; Arabidopsis thal... 37 0.27
UniRef50_A7AUU3 Cluster: DNA-directed RNA polymerase 2 subunit, ... 37 0.27
UniRef50_A4R9N1 Cluster: Predicted protein; n=1; Magnaporthe gri... 37 0.27
UniRef50_UPI000049984E Cluster: DNA-directed RNA polymerase I su... 37 0.36
UniRef50_Q2H0C1 Cluster: DNA-directed RNA polymerase subunit; n=... 37 0.36
UniRef50_Q5DGH5 Cluster: SJCHGC08580 protein; n=1; Schistosoma j... 36 0.48
UniRef50_A6RCK2 Cluster: Predicted protein; n=1; Ajellomyces cap... 36 0.48
UniRef50_Q4A328 Cluster: Transcription factor S-II (TFIIS) famil... 36 0.63
UniRef50_Q9VD81 Cluster: DNA-directed RNA polymerase subunit; n=... 36 0.63
UniRef50_Q7QXB3 Cluster: GLP_741_50228_49188; n=1; Giardia lambl... 36 0.63
UniRef50_Q5KKH5 Cluster: DNA-directed RNA polymerase subunit; n=... 36 0.63
UniRef50_Q4Q3Q4 Cluster: Transcription elongation factor-like pr... 36 0.84
UniRef50_Q4X1W6 Cluster: DNA-directed RNA polymerase subunit; n=... 36 0.84
UniRef50_Q7RCT6 Cluster: Putative transcription factor; n=2; Pla... 35 1.1
UniRef50_Q4QAW0 Cluster: Transcription elongation factor, putati... 35 1.1
UniRef50_P36954 Cluster: DNA-directed RNA polymerase II subunit ... 35 1.1
UniRef50_Q0DP65 Cluster: Os03g0711700 protein; n=4; Oryza sativa... 34 1.9
UniRef50_Q4UDQ7 Cluster: DNA-directed RNA polymerase 2 subunit, ... 34 1.9
UniRef50_A0EDT1 Cluster: Chromosome undetermined scaffold_90, wh... 34 1.9
UniRef50_UPI0000161EFD Cluster: Transcription factor SII homolog... 34 2.6
UniRef50_A5KAM3 Cluster: Putative uncharacterized protein; n=4; ... 34 2.6
UniRef50_A0CNA6 Cluster: Chromosome undetermined scaffold_22, wh... 34 2.6
UniRef50_Q8SRA1 Cluster: DNA-DIRECTED RNA POLYMERASE I SUBUNIT M... 34 2.6
UniRef50_Q4Q100 Cluster: Transcription factor S-II-like protein;... 33 3.4
UniRef50_Q55M04 Cluster: DNA-directed RNA polymerase subunit; n=... 33 3.4
UniRef50_Q2P9W0 Cluster: RNA polymerase I subunit RPA12; n=2; Tr... 33 4.5
UniRef50_A2FMI1 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
UniRef50_Q13D50 Cluster: Putative uncharacterized protein; n=1; ... 33 5.9
UniRef50_Q8I241 Cluster: DNA-directed RNA polymerase 2 subunit, ... 33 5.9
UniRef50_Q6TVG7 Cluster: ORF021 RNA polymerase subunit RPO30; n=... 32 7.8
UniRef50_Q4N7G2 Cluster: Putative uncharacterized protein; n=2; ... 32 7.8
UniRef50_A0DS61 Cluster: Chromosome undetermined scaffold_61, wh... 32 7.8
UniRef50_Q2NEY4 Cluster: RpoM2; n=2; Methanobacteriaceae|Rep: Rp... 32 7.8
UniRef50_P27948 Cluster: Transcription factor S-II-related prote... 32 7.8
>UniRef50_Q9Y2Y1 Cluster: DNA-directed RNA polymerase III subunit
RPC10; n=21; Fungi/Metazoa group|Rep: DNA-directed RNA
polymerase III subunit RPC10 - Homo sapiens (Human)
Length = 108
Score = 105 bits (251), Expect = 9e-22
Identities = 43/62 (69%), Positives = 48/62 (77%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
KE+D ++GGAAAWE VDST CP C + RAYF LQTRSADEPMTTFY+CCN C H W
Sbjct: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 392 RD 397
RD
Sbjct: 107 RD 108
>UniRef50_Q5KEF1 Cluster: RNA polymerase III smallest subunit,
putative; n=2; Filobasidiella neoformans|Rep: RNA
polymerase III smallest subunit, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 132
Score = 92.3 bits (219), Expect = 7e-18
Identities = 37/68 (54%), Positives = 46/68 (67%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
KE+D ++GG AW VD TD CP C + RAYF +Q RSADEPMTTFY+CC C H W
Sbjct: 46 KEVDDVLGGKEAWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCCE--CGHQW 103
Query: 392 RD*THCDY 415
R+ + D+
Sbjct: 104 REVSQADF 111
>UniRef50_Q9N4B7 Cluster: DNA-directed RNA polymerase subunit; n=9;
Bilateria|Rep: DNA-directed RNA polymerase subunit -
Caenorhabditis elegans
Length = 108
Score = 91.9 bits (218), Expect = 9e-18
Identities = 35/62 (56%), Positives = 43/62 (69%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
K++D ++GG AW TD CP C +GRAYF LQTRSADEP T FYRC ++ CAH W
Sbjct: 47 KDIDDVLGGPGAWANAQVTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRCADNACAHRW 106
Query: 392 RD 397
+D
Sbjct: 107 KD 108
>UniRef50_A3LW94 Cluster: DNA-directed RNA polymerase subunit; n=10;
Fungi/Metazoa group|Rep: DNA-directed RNA polymerase
subunit - Pichia stipitis (Yeast)
Length = 111
Score = 83.4 bits (197), Expect = 3e-15
Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCP--XCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAH 385
KE+D ++GG AW+ VD T A CP CG +AYF LQ RSADEPMTTFY+C N C H
Sbjct: 49 KEVDDVLGGDGAWDNVDQTSAQCPVDSCGGNKAYFFQLQIRSADEPMTTFYKCVN--CGH 106
Query: 386 NWRD 397
W++
Sbjct: 107 KWKE 110
>UniRef50_Q98TK0 Cluster: RNA polymerase III smallest subunit; n=1;
Platichthys flesus|Rep: RNA polymerase III smallest
subunit - Platichthys flesus (European flounder)
Length = 87
Score = 82.6 bits (195), Expect = 6e-15
Identities = 35/50 (70%), Positives = 40/50 (80%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYR 361
KE+D ++GGA AWE VDST CP CG+ RAYF +QTRSADEPMTTFYR
Sbjct: 38 KEVDDVLGGAKAWENVDSTPETCPTCGHLRAYFMQIQTRSADEPMTTFYR 87
>UniRef50_A4RUS3 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 120
Score = 75.8 bits (178), Expect = 6e-13
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
K +D ++GG AW VD T A CP C + AYF +Q RSADEPM+ FY+C CA W
Sbjct: 60 KTVDDVLGGDDAWRNVDKTSATCPGCAHDEAYFMQIQIRSADEPMSVFYKCVK--CARQW 117
Query: 392 RD 397
R+
Sbjct: 118 RE 119
>UniRef50_Q7QQW3 Cluster: DNA-directed RNA polymerase subunit; n=2;
Giardia intestinalis|Rep: DNA-directed RNA polymerase
subunit - Giardia lamblia ATCC 50803
Length = 105
Score = 75.8 bits (178), Expect = 6e-13
Identities = 29/62 (46%), Positives = 40/62 (64%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
K +D ++GG AW+ D T CP C + A++ +Q RS+DEPM+ FYRCC CAH W
Sbjct: 45 KSVDPVLGGETAWQGADKTQNPCPVCAFPDAFWIQMQIRSSDEPMSRFYRCCQ--CAHQW 102
Query: 392 RD 397
R+
Sbjct: 103 RE 104
>UniRef50_UPI00004998C5 Cluster: RNA polymerase III subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerase III
subunit - Entamoeba histolytica HM-1:IMSS
Length = 107
Score = 75.4 bits (177), Expect = 8e-13
Identities = 29/62 (46%), Positives = 39/62 (62%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
K++D ++G W+ T+ C CG+ AYF +Q RSADEPMTTFY+C N C + W
Sbjct: 46 KQIDAVLG-EEQWKNAQKTEIICEKCGHNSAYFMQIQIRSADEPMTTFYKCANFDCGYQW 104
Query: 392 RD 397
RD
Sbjct: 105 RD 106
>UniRef50_Q04307 Cluster: DNA-directed RNA polymerase III subunit
RPC10; n=11; Ascomycota|Rep: DNA-directed RNA polymerase
III subunit RPC10 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 110
Score = 72.5 bits (170), Expect = 6e-12
Identities = 34/65 (52%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCP---XCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCA 382
KE+D ++GG W+ VD T CP CG AYF LQ RSADEPMTTFY+C N C
Sbjct: 49 KEVDDVLGGG--WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVN--CG 104
Query: 383 HNWRD 397
H W++
Sbjct: 105 HRWKE 109
>UniRef50_Q2F638 Cluster: Ischemia/reperfusion inducible protein;
n=1; Bombyx mori|Rep: Ischemia/reperfusion inducible
protein - Bombyx mori (Silk moth)
Length = 274
Score = 70.5 bits (165), Expect = 2e-11
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +1
Query: 451 PSYIRXNXCQSLMMRNTMTSVISCVDFTASLRAAE 555
PSYIR N CQSLMMRNTMTSVISCVDFTASLRAAE
Sbjct: 26 PSYIRRNKCQSLMMRNTMTSVISCVDFTASLRAAE 60
>UniRef50_Q6EU09 Cluster: DNA-directed RNA polymerase subunit; n=3;
Oryza sativa|Rep: DNA-directed RNA polymerase subunit -
Oryza sativa subsp. japonica (Rice)
Length = 110
Score = 69.3 bits (162), Expect = 6e-11
Identities = 27/62 (43%), Positives = 37/62 (59%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
KE++ I + A + T CP C G AY+ +Q RSADEPM+TFY+CC C +W
Sbjct: 48 KEVEPIFSDSDAMKNAPKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDW 107
Query: 392 RD 397
R+
Sbjct: 108 RE 109
>UniRef50_O13896 Cluster: DNA-directed RNA polymerase III subunit
RPC10; n=1; Schizosaccharomyces pombe|Rep: DNA-directed
RNA polymerase III subunit RPC10 - Schizosaccharomyces
pombe (Fission yeast)
Length = 109
Score = 64.9 bits (151), Expect = 1e-09
Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPX--CGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAH 385
KE+D ++GG A+E T+ C C RAYF LQ RSADEPM+TFYRC C
Sbjct: 47 KEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCTK--CKF 104
Query: 386 NWRD 397
WR+
Sbjct: 105 QWRE 108
>UniRef50_Q4P5F3 Cluster: DNA-directed RNA polymerase subunit; n=1;
Ustilago maydis|Rep: DNA-directed RNA polymerase subunit
- Ustilago maydis (Smut fungus)
Length = 111
Score = 59.7 bits (138), Expect = 4e-08
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEP 343
K++D +MGG +W+ VDSTDA CP C +A+F LQ RSADEP
Sbjct: 47 KQVDDVMGGEESWKNVDSTDAPCPKCENPKAFFMQLQIRSADEP 90
>UniRef50_A2RAZ1 Cluster: Complex: hRPC11 is a small; n=5;
Eurotiomycetidae|Rep: Complex: hRPC11 is a small -
Aspergillus niger
Length = 117
Score = 58.8 bits (136), Expect = 8e-08
Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPX--CGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAH 385
KE++ + GG + DS CP C RAYF LQ RSADEPMTTF +C C
Sbjct: 55 KEVEDVFGGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCT--TCGA 112
Query: 386 NWRD 397
WR+
Sbjct: 113 RWRE 116
>UniRef50_Q9YEZ3 Cluster: Archaeal transcription factor S; n=2;
Thermoprotei|Rep: Archaeal transcription factor S -
Aeropyrum pernix
Length = 118
Score = 57.6 bits (133), Expect = 2e-07
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
CP CG+ YF +QTRSADEPMT FYRC C + WR+
Sbjct: 79 CPKCGHDEVYFWMMQTRSADEPMTRFYRC--KRCRYTWRE 116
>UniRef50_Q9LNK0 Cluster: DNA-directed RNA polymerase subunit; n=3;
Arabidopsis thaliana|Rep: DNA-directed RNA polymerase
subunit - Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 56.8 bits (131), Expect = 3e-07
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = +2
Query: 266 TDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
T+A CP CG+ +AYF +Q RSADEP + FYRC C WR+
Sbjct: 64 TEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLK--CEFTWRE 105
>UniRef50_A2EBM6 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 109
Score = 56.0 bits (129), Expect = 6e-07
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = +2
Query: 260 DSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
+ T A C CG+ A+F +Q RSADEP T F++CC C + WR+
Sbjct: 65 NKTQARCDKCGHNEAFFTEIQIRSADEPATLFFKCCK--CGNTWRE 108
>UniRef50_A0RXH6 Cluster: DNA-directed RNA polymerase, subunit
M/Transcription elongation factor TFIIS; n=1;
Cenarchaeum symbiosum|Rep: DNA-directed RNA polymerase,
subunit M/Transcription elongation factor TFIIS -
Cenarchaeum symbiosum
Length = 103
Score = 55.6 bits (128), Expect = 7e-07
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +2
Query: 227 IMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
++ G + + + C CG+G A + LQTRSADEP T FYRC C+H WR
Sbjct: 47 VLDGPVDEKLLSTIKIECEKCGHGEAVWWMLQTRSADEPTTQFYRCIK--CSHTWR 100
>UniRef50_Q58548 Cluster: DNA-directed RNA polymerase subunit M;
n=9; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit M - Methanococcus jannaschii
Length = 108
Score = 55.6 bits (128), Expect = 7e-07
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = +2
Query: 251 EXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
E + +T CP CG+ AY+ QTR ADEP T FY+C C H WR+
Sbjct: 60 ETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKC--KKCGHTWRE 106
>UniRef50_A3DM83 Cluster: Transcription factor S; n=1;
Staphylothermus marinus F1|Rep: Transcription factor S -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 104
Score = 54.4 bits (125), Expect = 2e-06
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
+ CP CGY AY+ +QTR+ADEP T FY+C C + WR+
Sbjct: 62 EVTCPKCGYHEAYYWIVQTRAADEPPTRFYKC--RRCGYVWRE 102
>UniRef50_Q07271 Cluster: DNA-directed RNA polymerase subunit M;
n=4; Sulfolobaceae|Rep: DNA-directed RNA polymerase
subunit M - Sulfolobus acidocaldarius
Length = 111
Score = 54.4 bits (125), Expect = 2e-06
Identities = 29/65 (44%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 206 SAKELDYIMGGAAAWEXVDSTDA-XCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCA 382
SAKE ++ V T CP CG AYF LQTRSADEP T FY+C C
Sbjct: 47 SAKEKTLVLESDMPKTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTK--CG 104
Query: 383 HNWRD 397
WR+
Sbjct: 105 KVWRE 109
>UniRef50_Q5CYY8 Cluster: RNA polymerase III subunit C11; n=1;
Cryptosporidium parvum Iowa II|Rep: RNA polymerase III
subunit C11 - Cryptosporidium parvum Iowa II
Length = 62
Score = 53.6 bits (123), Expect = 3e-06
Identities = 22/42 (52%), Positives = 26/42 (61%)
Frame = +2
Query: 272 AXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
A CP C + AYF LQ RSADEPMT+FY C C W++
Sbjct: 22 AVCPKCSFSEAYFFQLQIRSADEPMTSFYTCVK--CDFKWKE 61
>UniRef50_A7ASV0 Cluster: Transcription factor S-II protein,
putative; n=3; Piroplasmida|Rep: Transcription factor
S-II protein, putative - Babesia bovis
Length = 109
Score = 53.2 bits (122), Expect = 4e-06
Identities = 22/42 (52%), Positives = 26/42 (61%)
Frame = +2
Query: 272 AXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
A CP C AYF +QTRSADEPMT F+ C C H W++
Sbjct: 70 AVCPSCHNKEAYFMSIQTRSADEPMTQFFVCT--ACRHRWKE 109
>UniRef50_Q7QY69 Cluster: GLP_572_32225_32536; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_572_32225_32536 - Giardia lamblia
ATCC 50803
Length = 103
Score = 52.8 bits (121), Expect = 5e-06
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
D CP C +G+AY+ +Q RSADE T F+ CC+ C H +R
Sbjct: 61 DETCPKCHHGQAYYASMQMRSADEGQTIFFECCS--CGHKYR 100
>UniRef50_Q15ES4 Cluster: RNA polymerase III subunit C11-like
protein; n=2; Schistosoma|Rep: RNA polymerase III
subunit C11-like protein - Schistosoma mansoni (Blood
fluke)
Length = 115
Score = 52.8 bits (121), Expect = 5e-06
Identities = 23/44 (52%), Positives = 26/44 (59%)
Frame = +2
Query: 266 TDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
TD CP C + RAYF +QTRSADEP T Y C C H W +
Sbjct: 73 TDEKCPKCSHTRAYFVQMQTRSADEPSTIKYSCIK--CHHIWTE 114
>UniRef50_Q5V537 Cluster: DNA-directed RNA-polymerase subunit M;
n=6; Halobacteriaceae|Rep: DNA-directed RNA-polymerase
subunit M - Haloarcula marismortui (Halobacterium
marismortui)
Length = 107
Score = 52.8 bits (121), Expect = 5e-06
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
D C CG+G+A++ QT SADEP T F++C C H WR+
Sbjct: 65 DVTCEECGHGKAWYTIKQTGSADEPPTRFFKC--QECGHRWRE 105
>UniRef50_Q2FPF9 Cluster: Transcription factor S; n=3;
Euryarchaeota|Rep: Transcription factor S -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 107
Score = 52.4 bits (120), Expect = 7e-06
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
CP CG G A++ Q RSADE F+RC N C H WR+
Sbjct: 66 CPNCGNGEAFWWLRQLRSADESEVRFFRCTNSKCNHTWRE 105
>UniRef50_Q54K02 Cluster: RNA polymerase III subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase III
subunit - Dictyostelium discoideum AX4
Length = 111
Score = 52.0 bits (119), Expect = 9e-06
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 227 IMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
+ GG AW+ D + C C Y RA +Q +P T++YRC N C + W+
Sbjct: 52 VFGGEEAWKSADVVEVECQVCRYRRASLIEIQVDPIGQPKTSYYRCKNPGCENQWQ 107
>UniRef50_UPI00006C17FE Cluster: PREDICTED: similar to polymerase
(RNA) III (DNA directed) polypeptide K; n=3;
Catarrhini|Rep: PREDICTED: similar to polymerase (RNA)
III (DNA directed) polypeptide K - Homo sapiens
Length = 66
Score = 51.6 bits (118), Expect = 1e-05
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +2
Query: 317 LQTRSADEPMTTFYRCCNHXCAHNWRD 397
LQT SADEP TTFY+CC C H+WRD
Sbjct: 40 LQTHSADEPKTTFYQCCRTQCGHHWRD 66
>UniRef50_Q8ZTX9 Cluster: DNA-directed RNA polymerase subunit M;
n=7; Thermoprotei|Rep: DNA-directed RNA polymerase
subunit M - Pyrobaculum aerophilum
Length = 110
Score = 51.6 bits (118), Expect = 1e-05
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
CP CG+ AY QTR+ADEP T FYRC C + WR+
Sbjct: 71 CPKCGHDEAYVWVQQTRAADEPPTRFYRCTK--CGYTWRE 108
>UniRef50_O96159 Cluster: Transcription factor, putative; n=5;
Plasmodium|Rep: Transcription factor, putative -
Plasmodium falciparum (isolate 3D7)
Length = 106
Score = 50.8 bits (116), Expect = 2e-05
Identities = 22/47 (46%), Positives = 27/47 (57%)
Frame = +2
Query: 257 VDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
+ T A CP C AYF LQ RSADEP T FY C C ++W++
Sbjct: 62 MSKTQAVCPKCTNDEAYFYTLQIRSADEPSTIFYICVK--CNYHWKE 106
>UniRef50_A7D318 Cluster: Transcription factor TFIIS; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep: Transcription
factor TFIIS - Halorubrum lacusprofundi ATCC 49239
Length = 108
Score = 50.0 bits (114), Expect = 4e-05
Identities = 23/47 (48%), Positives = 26/47 (55%)
Frame = +2
Query: 266 TDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD*TH 406
T A CP CG RAY+ Q RSADE T F+ C C H WR+ H
Sbjct: 64 TTAHCPECGNDRAYWYMQQIRSADESETRFFVCTE--CEHKWREDDH 108
>UniRef50_Q4P1X5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 315
Score = 49.6 bits (113), Expect = 5e-05
Identities = 27/54 (50%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 236 GAAAWEXVDSTDAX-CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
GAAA E TDA C C + + +QTRSADEPMTTF C N C H W+
Sbjct: 264 GAAAQEA--ETDAFQCGRCKQRKTRYYQMQTRSADEPMTTFVTCTN--CNHKWK 313
>UniRef50_Q97AQ6 Cluster: Transcription factor [TFIIS/RPB9]; n=5;
Thermoplasmatales|Rep: Transcription factor [TFIIS/RPB9]
- Thermoplasma volcanium
Length = 106
Score = 49.6 bits (113), Expect = 5e-05
Identities = 29/65 (44%), Positives = 36/65 (55%)
Frame = +2
Query: 203 SSAKELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCA 382
S+ KE I +A E +DS DA CP C + A + QTRSADEP T FY C C
Sbjct: 45 SNDKETIMIREEVSA-EPLDS-DAICPRCHHKGARYVLKQTRSADEPETKFYTC--EECG 100
Query: 383 HNWRD 397
+ WR+
Sbjct: 101 YRWRE 105
>UniRef50_A7DQB3 Cluster: Transcription termination factor Tfs; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep:
Transcription termination factor Tfs - Candidatus
Nitrosopumilus maritimus SCM1
Length = 105
Score = 49.2 bits (112), Expect = 6e-05
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
C CG+ A + LQTRSADEP T FYRC C + WR+
Sbjct: 66 CEKCGHDEAIWWMLQTRSADEPTTQFYRCTK--CQYTWRN 103
>UniRef50_Q54YG9 Cluster: RNA polymerase II elongation factor; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase II
elongation factor - Dictyostelium discoideum AX4
Length = 319
Score = 48.8 bits (111), Expect = 8e-05
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + + LQTRSADEP TTF +CC C + WR
Sbjct: 279 CGKCKQRKCTYTQLQTRSADEPPTTFVKCCVKGCGNRWR 317
>UniRef50_Q5V5C5 Cluster: DNA-directed RNA-polymerase subunit M;
n=4; Halobacteriaceae|Rep: DNA-directed RNA-polymerase
subunit M - Haloarcula marismortui (Halobacterium
marismortui)
Length = 108
Score = 48.8 bits (111), Expect = 8e-05
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = +2
Query: 263 STDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD*TH 406
+T A CP CG RA++ Q R+ADE T F+ C C H WR+ H
Sbjct: 63 TTGARCPECGNERAFYEMKQIRAADESETRFFTCTE--CEHKWREDDH 108
>UniRef50_Q54YF5 Cluster: RNA polymerase I subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase I
subunit - Dictyostelium discoideum AX4
Length = 324
Score = 48.4 bits (110), Expect = 1e-04
Identities = 19/32 (59%), Positives = 21/32 (65%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
D CP CG+G+ YF QTRSADE T FY C
Sbjct: 282 DEKCPECGHGKMYFKTAQTRSADEGQTIFYDC 313
>UniRef50_Q9P9I8 Cluster: Archaeal transcription factor S; n=2;
Methanococcaceae|Rep: Archaeal transcription factor S -
Methanococcus thermolithotrophicus
Length = 105
Score = 48.4 bits (110), Expect = 1e-04
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = +2
Query: 251 EXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
+ + +T CP CG A + QTR ADEP T FY+C C H WR+
Sbjct: 57 DTLPTTRIECPSCGNMEASWWLQQTRCADEPETRFYKC--KKCGHTWRE 103
>UniRef50_P36958 Cluster: DNA-directed RNA polymerase II subunit
RPB9; n=9; Coelomata|Rep: DNA-directed RNA polymerase II
subunit RPB9 - Drosophila melanogaster (Fruit fly)
Length = 129
Score = 48.4 bits (110), Expect = 1e-04
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
D CP C + A F QTR A+E M +Y C N C H W +
Sbjct: 87 DHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>UniRef50_Q0D7N2 Cluster: Os07g0229700 protein; n=4;
Magnoliophyta|Rep: Os07g0229700 protein - Oryza sativa
subsp. japonica (Rice)
Length = 379
Score = 46.8 bits (106), Expect = 3e-04
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C CG + + LQTRSADEPMTTF C N C ++W+
Sbjct: 341 CGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 377
>UniRef50_A7Q3Y6 Cluster: Chromosome chr13 scaffold_48, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr13 scaffold_48, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 309
Score = 46.8 bits (106), Expect = 3e-04
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C CG + + LQTRSADEPMTTF C N C ++W+
Sbjct: 271 CGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 307
>UniRef50_Q5CVE1 Cluster: Transcription elongation factor TFIIS;
n=2; Cryptosporidium|Rep: Transcription elongation
factor TFIIS - Cryptosporidium parvum Iowa II
Length = 332
Score = 46.0 bits (104), Expect = 6e-04
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + + +QTRSADEPMTTF RC N C + W+
Sbjct: 295 CGKCKTNKTTYYQMQTRSADEPMTTFVRCLN--CGNRWK 331
>UniRef50_A6RN27 Cluster: Transcription elongation factor S-II; n=6;
Pezizomycotina|Rep: Transcription elongation factor S-II
- Botryotinia fuckeliana B05.10
Length = 301
Score = 46.0 bits (104), Expect = 6e-04
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C CG + + QTRSADEPMTTF C C H W+
Sbjct: 263 CGKCGQKKVSYSQAQTRSADEPMTTFCEC--QVCGHRWK 299
>UniRef50_O27369 Cluster: DNA-directed RNA polymerase subunit M;
n=6; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit M - Methanobacterium thermoautotrophicum
Length = 104
Score = 46.0 bits (104), Expect = 6e-04
Identities = 20/45 (44%), Positives = 25/45 (55%)
Frame = +2
Query: 263 STDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
+T CP CG A++ QTR ADE T F+RC C H WR+
Sbjct: 60 TTRVECPKCGNMEAFWWLQQTRRADESETRFFRCTR--CKHTWRE 102
>UniRef50_Q9ZVH8 Cluster: Putative elongation factor; n=5;
Magnoliophyta|Rep: Putative elongation factor -
Arabidopsis thaliana (Mouse-ear cress)
Length = 378
Score = 45.6 bits (103), Expect = 8e-04
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 263 STDAX-CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
STD C CG + + +QTRSADEPMTT+ C N C ++W+
Sbjct: 334 STDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVN--CDNHWK 376
>UniRef50_Q8L5V0 Cluster: RNA Polymerase II subunit 14.5 kD,
putative; n=9; Magnoliophyta|Rep: RNA Polymerase II
subunit 14.5 kD, putative - Arabidopsis thaliana
(Mouse-ear cress)
Length = 114
Score = 45.6 bits (103), Expect = 8e-04
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 206 SAKELDYIMGGAAAWEXVDSTDAX-CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCA 382
S E I+ A+ + T A C C +G A F R +E MT F+ CCN C+
Sbjct: 51 SVSEQTQILSDVASDPTLPRTKAVRCAKCQHGEAVFFQATARG-EEGMTLFFVCCNPNCS 109
Query: 383 HNWRD 397
H WR+
Sbjct: 110 HRWRE 114
>UniRef50_Q2U4B9 Cluster: Transcription elongation factor
TFIIS/Cofactor of enhancer-binding protein Sp1; n=8;
Eurotiomycetidae|Rep: Transcription elongation factor
TFIIS/Cofactor of enhancer-binding protein Sp1 -
Aspergillus oryzae
Length = 304
Score = 45.2 bits (102), Expect = 0.001
Identities = 20/44 (45%), Positives = 24/44 (54%)
Frame = +2
Query: 263 STDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
ST C CG + + QTRSADEPMT F C N C +W+
Sbjct: 262 STSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTCLN--CGKSWK 303
>UniRef50_A4S3C9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 173
Score = 44.4 bits (100), Expect = 0.002
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 263 STDAX-CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
STDA C C + + LQTRSADEPMTTF C C + W+
Sbjct: 129 STDAFKCGKCKQRKCTYYQLQTRSADEPMTTFVTCVE--CGNRWK 171
>UniRef50_Q4QDH9 Cluster: RNA polymerase III C11 subunit, putative;
n=3; Leishmania|Rep: RNA polymerase III C11 subunit,
putative - Leishmania major
Length = 151
Score = 44.4 bits (100), Expect = 0.002
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +2
Query: 287 CGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C +AYF +Q RSADEP T F++C C H WR
Sbjct: 116 CQSTKAYFIQIQMRSADEPATVFFKCVE--CGHQWR 149
>UniRef50_Q22CT1 Cluster: Transcription factor S-II; n=1;
Tetrahymena thermophila SB210|Rep: Transcription factor
S-II - Tetrahymena thermophila SB210
Length = 136
Score = 44.0 bits (99), Expect = 0.002
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
CP CG+ YF +QTRSADE T FY C
Sbjct: 97 CPDCGHDTLYFWTVQTRSADEGSTVFYEC 125
>UniRef50_Q8PX24 Cluster: DNA-directed RNA polymerase subunit M;
n=3; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit M - Methanosarcina mazei (Methanosarcina frisia)
Length = 107
Score = 44.0 bits (99), Expect = 0.002
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 263 STDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
+T+A CP CG A + Q RSADE T F++C C + WR+
Sbjct: 63 TTNAKCPECGNNTAAWWLRQLRSADESETRFFKCTK--CGYTWRE 105
>UniRef50_A0B7Y7 Cluster: Transcription factor TFIIS; n=1;
Methanosaeta thermophila PT|Rep: Transcription factor
TFIIS - Methanosaeta thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 85
Score = 44.0 bits (99), Expect = 0.002
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +2
Query: 263 STDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
+T A CP CG AY+ Q R+ADE F+RC C + WR+
Sbjct: 41 TTKAKCPECGNDTAYWWLRQLRAADESEVRFFRCTK--CGNTWRE 83
>UniRef50_Q5YFI0 Cluster: Transcription elongation factor TFIIS;
n=2; Singapore grouper iridovirus|Rep: Transcription
elongation factor TFIIS - Singapore grouper iridovirus
Length = 92
Score = 43.6 bits (98), Expect = 0.003
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +2
Query: 257 VDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
V+ CP CG + + QTRSADEPMT F C N C W
Sbjct: 48 VEEGTLQCPKCGCKKVHVVQRQTRSADEPMTVFAVCSN--CGKRW 90
>UniRef50_Q9GZ09 Cluster: Transcription elongation factor TFIIS;
n=2; Moneuplotes crassus|Rep: Transcription elongation
factor TFIIS - Euplotes crassus
Length = 328
Score = 43.6 bits (98), Expect = 0.003
Identities = 24/62 (38%), Positives = 33/62 (53%)
Frame = +2
Query: 209 AKELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHN 388
+K DYI+ + E + + C C + F QTRSADEPMTTF +C C+HN
Sbjct: 272 SKRSDYILANSKIKEGMYT----CEKCKSKKTTFYEQQTRSADEPMTTFVQCL--MCSHN 325
Query: 389 WR 394
+
Sbjct: 326 MK 327
>UniRef50_Q8SS71 Cluster: TRANSCRIPTION ELONGATION FACTOR SII; n=1;
Encephalitozoon cuniculi|Rep: TRANSCRIPTION ELONGATION
FACTOR SII - Encephalitozoon cuniculi
Length = 257
Score = 43.6 bits (98), Expect = 0.003
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C CG + + LQTRS DEPMTTF C C + WR
Sbjct: 220 CSKCGERKCSYRQLQTRSGDEPMTTFVTC---ECGNKWR 255
>UniRef50_Q74N12 Cluster: NEQ377; n=1; Nanoarchaeum equitans|Rep:
NEQ377 - Nanoarchaeum equitans
Length = 106
Score = 41.5 bits (93), Expect(2) = 0.003
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
CP C + LQTR++DE T FY+C C + WR+
Sbjct: 67 CPKCSSEEVVYFTLQTRASDEAETIFYKCLK--CGYTWRE 104
Score = 21.4 bits (43), Expect(2) = 0.003
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +2
Query: 260 DSTDAXCPXCGY 295
D T CP CGY
Sbjct: 18 DKTYLVCPVCGY 29
>UniRef50_Q01C33 Cluster: RNA polymerase III subunit C11; n=2;
Ostreococcus|Rep: RNA polymerase III subunit C11 -
Ostreococcus tauri
Length = 136
Score = 43.2 bits (97), Expect = 0.004
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 263 STDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRC--CNHXCAHN 388
+ D CP C + F +Q RSADE T FY C CNH + N
Sbjct: 92 TVDEKCPKCKHKGLNFYTMQLRSADEGQTVFYECPKCNHTFSQN 135
>UniRef50_Q5CUJ8 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium parvum Iowa II|Rep: Putative
uncharacterized protein - Cryptosporidium parvum Iowa II
Length = 203
Score = 43.2 bits (97), Expect = 0.004
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAH 385
CP C + A+F Q RSADE T Y CC C H
Sbjct: 164 CPECSHNEAFFTQFQARSADEGTTVMYECCK--CQH 197
>UniRef50_Q9YPH8 Cluster: Transcription elongation factor SII; n=8;
Chlorovirus|Rep: Transcription elongation factor SII -
Chlorella virus
Length = 180
Score = 42.7 bits (96), Expect = 0.006
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 239 AAAWEXVDSTDAX--CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
A+A + D D C C + + +QTRSADEPMT F +C H C W+
Sbjct: 128 ASAMDPKDMPDGMLQCGKCKSRKTSYYEMQTRSADEPMTVFAKC--HSCGSRWK 179
>UniRef50_Q6GZP4 Cluster: Transcription elongation factor SII; n=3;
Ranavirus|Rep: Transcription elongation factor SII -
Frog virus 3 (FV3)
Length = 92
Score = 42.7 bits (96), Expect = 0.006
Identities = 20/45 (44%), Positives = 22/45 (48%)
Frame = +2
Query: 257 VDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
V+ CP CG R + QTRSADEPMT F C C W
Sbjct: 48 VEEGTVKCPGCGSRRVHALQRQTRSADEPMTLFAMCSE--CGKRW 90
>UniRef50_A0CQT2 Cluster: Chromosome undetermined scaffold_24, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_24,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 42.7 bits (96), Expect = 0.006
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 266 TDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
TD C CG +A+F QTR ADE T + C C H W++
Sbjct: 61 TDEQCDKCGCLKAFFWEFQTRGADEQSTISFECIK--CGHKWKN 102
>UniRef50_Q8SSB3 Cluster: DNA-DIRECTED RNA POLYMERASE III 12.5kDa
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA-DIRECTED
RNA POLYMERASE III 12.5kDa SUBUNIT - Encephalitozoon
cuniculi
Length = 104
Score = 42.7 bits (96), Expect = 0.006
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +2
Query: 287 CGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
CG F LQTRSADEPMT FY+C C W++
Sbjct: 70 CGSEEVSFVELQTRSADEPMTIFYKCIR--CKKVWKE 104
>UniRef50_UPI0000E47C8A Cluster: PREDICTED: similar to
ENSANGP00000027484; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000027484
- Strongylocentrotus purpuratus
Length = 255
Score = 42.3 bits (95), Expect = 0.007
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +2
Query: 251 EXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
E S C C + +QTRSADEPMTTF C + C H W+
Sbjct: 208 EGTRSALLTCGKCRKKNCTYNQMQTRSADEPMTTFVFC--NDCGHRWK 253
>UniRef50_O17587 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 119
Score = 42.3 bits (95), Expect = 0.007
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 251 EXVDST-DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
E D+ D C CG+ +A + +QTRSADE T FY C
Sbjct: 70 ESADAVVDHICTKCGHSKASYSTMQTRSADEGQTVFYTC 108
>UniRef50_Q0W2J5 Cluster: Archaeal transcription factor S; n=4;
Euryarchaeota|Rep: Archaeal transcription factor S -
Uncultured methanogenic archaeon RC-I
Length = 106
Score = 42.3 bits (95), Expect = 0.007
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
+ CP CG +AY+ Q RSADE F+RC C WR+
Sbjct: 64 EVKCPDCGNQKAYWWMRQLRSADESEVRFFRCTE--CGKTWRE 104
>UniRef50_Q5UQS8 Cluster: TFII-like transcription factor; n=1;
Acanthamoeba polyphaga mimivirus|Rep: TFII-like
transcription factor - Mimivirus
Length = 173
Score = 41.9 bits (94), Expect = 0.010
Identities = 19/31 (61%), Positives = 20/31 (64%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
C C +F LQTRSADEPMTTFY C N
Sbjct: 134 CYACKNTSYHFYQLQTRSADEPMTTFYICKN 164
>UniRef50_Q4N8B9 Cluster: Transcription elongation factor SII,
putative; n=1; Theileria parva|Rep: Transcription
elongation factor SII, putative - Theileria parva
Length = 324
Score = 41.9 bits (94), Expect = 0.010
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + LQTRS+DEPMTTF C N C + WR
Sbjct: 287 CNKCNSKVTTYYQLQTRSSDEPMTTFVTCLN--CKNRWR 323
>UniRef50_Q4DRW2 Cluster: Transcription elongation factor, putative;
n=3; Trypanosoma|Rep: Transcription elongation factor,
putative - Trypanosoma cruzi
Length = 243
Score = 41.9 bits (94), Expect = 0.010
Identities = 21/44 (47%), Positives = 23/44 (52%)
Frame = +2
Query: 263 STDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
ST CP C + QTRSADEPMT F C + C H WR
Sbjct: 200 STLFPCPSCKARDCSWTQKQTRSADEPMTVF--CICNVCDHKWR 241
>UniRef50_P52652 Cluster: Putative transcription elongation factor
S-II; n=2; Caenorhabditis|Rep: Putative transcription
elongation factor S-II - Caenorhabditis elegans
Length = 308
Score = 41.9 bits (94), Expect = 0.010
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C CG + LQTRS+DEPMTTF C C + W+
Sbjct: 270 CGKCGKKNCTYTQLQTRSSDEPMTTFVFCLE--CGNRWK 306
>UniRef50_Q0UVI1 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 301
Score = 41.5 bits (93), Expect = 0.013
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +2
Query: 263 STDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
S + C C + QTRSADEPMTTF C N C + W+
Sbjct: 258 SKEFQCGKCKKKMVSYSQAQTRSADEPMTTFCECMN--CGNRWK 299
>UniRef50_A3LRC5 Cluster: Predicted protein; n=5;
Saccharomycetales|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 294
Score = 41.5 bits (93), Expect = 0.013
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + + + +QTRSADEP+TTF C N C + W+
Sbjct: 256 CGKCKHKKVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 292
>UniRef50_Q586X9 Cluster: Transcription elongation factor S-II,
putative; n=1; Trypanosoma brucei|Rep: Transcription
elongation factor S-II, putative - Trypanosoma brucei
Length = 467
Score = 41.1 bits (92), Expect = 0.017
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
CP C + LQ RSADEP T F +C C HNW +
Sbjct: 429 CPECHGRECEWRELQIRSADEPTTKFIKCIK--CKHNWSE 466
>UniRef50_A0E7M3 Cluster: Chromosome undetermined scaffold_81, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_81,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 118
Score = 41.1 bits (92), Expect = 0.017
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
CP C + AYF Q RSADE T FY C
Sbjct: 79 CPKCSHEEAYFSTAQLRSADEGSTVFYEC 107
>UniRef50_UPI00006CB60F Cluster: hypothetical protein
TTHERM_00444250; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00444250 - Tetrahymena
thermophila SB210
Length = 108
Score = 40.7 bits (91), Expect = 0.022
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
D CP C AY Q RS DE T Y C N C+H W+D
Sbjct: 66 DMICPACEKRGAYIRLEQDRSLDEGQTQHYICKN--CSHTWKD 106
>UniRef50_Q8GSD5 Cluster: Putative RNA Polymerase II subunit 14.5
kD; n=1; Oryza sativa (japonica cultivar-group)|Rep:
Putative RNA Polymerase II subunit 14.5 kD - Oryza
sativa subsp. japonica (Rice)
Length = 116
Score = 40.7 bits (91), Expect = 0.022
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
C CG+ A F T+ ++ +T ++ CCN C H WRD
Sbjct: 78 CYNCGHPEAAFFQAPTKG-EKGLTLYFICCNPSCGHRWRD 116
>UniRef50_Q4CXN7 Cluster: Transcription elongation factor S-II,
putative; n=2; Trypanosoma cruzi|Rep: Transcription
elongation factor S-II, putative - Trypanosoma cruzi
Length = 477
Score = 40.7 bits (91), Expect = 0.022
Identities = 18/38 (47%), Positives = 20/38 (52%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
CP CG R + QTRSADEP T F C C + W
Sbjct: 439 CPNCGKNRCSYYEQQTRSADEPTTKFVTCLE--CKYVW 474
>UniRef50_Q5DAX2 Cluster: SJCHGC05867 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC05867 protein - Schistosoma
japonicum (Blood fluke)
Length = 126
Score = 40.3 bits (90), Expect = 0.029
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
D C CG A F QT A+E M +Y C N C H W +
Sbjct: 84 DHICRRCGKQEAVFFQSQTLKAEENMRLYYVCTNVECLHKWTE 126
>UniRef50_Q4UH96 Cluster: Transcription elongation factor, putative;
n=1; Theileria annulata|Rep: Transcription elongation
factor, putative - Theileria annulata
Length = 418
Score = 40.3 bits (90), Expect = 0.029
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + LQTRS+DEPMTTF C N C + W+
Sbjct: 381 CNKCNSKITTYYQLQTRSSDEPMTTFVTCLN--CNNRWK 417
>UniRef50_Q4DC35 Cluster: DNA-directed RNA polymerase subunit; n=2;
Trypanosoma cruzi|Rep: DNA-directed RNA polymerase
subunit - Trypanosoma cruzi
Length = 167
Score = 40.3 bits (90), Expect = 0.029
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 287 CGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C RA++ +Q RSADEP TTF++C C W+
Sbjct: 132 CDGNRAHYVQIQMRSADEPATTFFKCLK--CGFQWK 165
>UniRef50_A7ARU9 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 256
Score = 40.3 bits (90), Expect = 0.029
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
C CG+ AY+ Q RSADE MT Y C
Sbjct: 217 CDNCGFEEAYYSTFQARSADEGMTVMYEC 245
>UniRef50_P07273 Cluster: Transcription elongation factor S-II; n=5;
Saccharomycetales|Rep: Transcription elongation factor
S-II - Saccharomyces cerevisiae (Baker's yeast)
Length = 309
Score = 40.3 bits (90), Expect = 0.029
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 209 AKELDYIMGGAAAWEXVDSTDA-XCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAH 385
AK+ Y GA V TD C C + + LQTRSADEP+TTF C C +
Sbjct: 249 AKQNLYNAQGATIERSV--TDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGN 304
Query: 386 NWR 394
W+
Sbjct: 305 RWK 307
>UniRef50_P49373 Cluster: Transcription elongation factor S-II; n=1;
Schizosaccharomyces pombe|Rep: Transcription elongation
factor S-II - Schizosaccharomyces pombe (Fission yeast)
Length = 293
Score = 40.3 bits (90), Expect = 0.029
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + + +QTRSADEPMTTF C C + W+
Sbjct: 255 CGKCKQKKVSYYQMQTRSADEPMTTFCECT--VCGNRWK 291
>UniRef50_Q387Z6 Cluster: RNA polymerase III C11 subunit, putative;
n=1; Trypanosoma brucei|Rep: RNA polymerase III C11
subunit, putative - Trypanosoma brucei
Length = 126
Score = 39.9 bits (89), Expect = 0.039
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 287 CGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C RA++ +Q RSADEP TTF++C C W+
Sbjct: 91 CDGDRAHYVQIQMRSADEPATTFFKCLK--CGFQWK 124
>UniRef50_A2EHZ7 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 126
Score = 39.9 bits (89), Expect = 0.039
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRC--CNHXCAHN 388
CP CG YF Q RSADE T FY C C + + N
Sbjct: 87 CPECGEEGLYFTTAQIRSADEGQTIFYECIHCGYRFSQN 125
>UniRef50_A7TNI5 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 323
Score = 39.9 bits (89), Expect = 0.039
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + + LQTRSADEP+TTF C C + W+
Sbjct: 285 CGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 321
>UniRef50_A1RXU9 Cluster: Transcription termination factor Tfs; n=1;
Thermofilum pendens Hrk 5|Rep: Transcription termination
factor Tfs - Thermofilum pendens (strain Hrk 5)
Length = 109
Score = 39.9 bits (89), Expect = 0.039
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
C CG +AY LQTR+ DEP T FY C
Sbjct: 70 CENCGNDKAYVYELQTRAGDEPATRFYIC 98
>UniRef50_Q9DGD2 Cluster: Transcription elongation factor XSII-K1;
n=7; Euteleostomi|Rep: Transcription elongation factor
XSII-K1 - Xenopus laevis (African clawed frog)
Length = 645
Score = 39.5 bits (88), Expect = 0.051
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEPMTTF C + C + W+
Sbjct: 607 CEKCKKKNCSYNQVQTRSADEPMTTFVLC--NECGNRWK 643
>UniRef50_A6QWZ4 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 378
Score = 39.5 bits (88), Expect = 0.051
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +2
Query: 263 STDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
ST C CG + + QTRSADEPMT F C
Sbjct: 330 STSLQCGKCGQKKVTYTEAQTRSADEPMTLFCTC 363
>UniRef50_O75764 Cluster: Transcription elongation factor A protein
3; n=21; Eutheria|Rep: Transcription elongation factor A
protein 3 - Homo sapiens (Human)
Length = 348
Score = 39.5 bits (88), Expect = 0.051
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEPMTTF C + C + W+
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 346
>UniRef50_UPI0000499ED2 Cluster: hypothetical protein 230.t00020;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 230.t00020 - Entamoeba histolytica HM-1:IMSS
Length = 78
Score = 39.1 bits (87), Expect = 0.068
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +2
Query: 260 DSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
D+ + C CG + QTRSADEPMT F C + C W+
Sbjct: 33 DNNEFKCGKCGSRKIQETLAQTRSADEPMTRFLTCAS--CGFFWK 75
>UniRef50_Q6P0U5 Cluster: Zgc:77732; n=4; Clupeocephala|Rep:
Zgc:77732 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 409
Score = 39.1 bits (87), Expect = 0.068
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEPMTTF C + C + W+
Sbjct: 371 CGKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 407
>UniRef50_Q4TIF2 Cluster: Chromosome undetermined SCAF2195, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF2195,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 255
Score = 39.1 bits (87), Expect = 0.068
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEPMTTF C + C + W+
Sbjct: 219 CGKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 255
>UniRef50_Q6C6I8 Cluster: Similar to DEHA0C15686g Debaryomyces
hansenii; n=1; Yarrowia lipolytica|Rep: Similar to
DEHA0C15686g Debaryomyces hansenii - Yarrowia lipolytica
(Candida lipolytica)
Length = 295
Score = 39.1 bits (87), Expect = 0.068
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + + +QTRSADEP+TTF C N C W+
Sbjct: 257 CGKCKQKKVSYYQMQTRSADEPLTTFCTCEN--CGTRWK 293
>UniRef50_A1CED1 Cluster: DNA-directed RNA polymerase subunit; n=7;
Pezizomycotina|Rep: DNA-directed RNA polymerase subunit
- Aspergillus clavatus
Length = 147
Score = 39.1 bits (87), Expect = 0.068
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 266 TDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRC-CNHXCAH 385
T C CG YF +Q RSADE T FY C C + A+
Sbjct: 79 TQHTCARCGRKEMYFTTVQLRSADEGSTVFYTCVCGYKYAN 119
>UniRef50_P23193 Cluster: Transcription elongation factor A protein
1; n=41; Eumetazoa|Rep: Transcription elongation factor
A protein 1 - Homo sapiens (Human)
Length = 301
Score = 39.1 bits (87), Expect = 0.068
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEPMTTF C + C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>UniRef50_O94703 Cluster: DNA-directed RNA polymerase I subunit
RPA12; n=1; Schizosaccharomyces pombe|Rep: DNA-directed
RNA polymerase I subunit RPA12 - Schizosaccharomyces
pombe (Fission yeast)
Length = 119
Score = 39.1 bits (87), Expect = 0.068
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +2
Query: 251 EXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
E + + CP CG F LQ RSADE T FY C
Sbjct: 71 EEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYEC 108
>UniRef50_Q9LU97 Cluster: Similarity to transcription-associated
zinc ribbon protein; n=2; Arabidopsis thaliana|Rep:
Similarity to transcription-associated zinc ribbon
protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 119
Score = 38.7 bits (86), Expect = 0.090
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
C C + + QTRSADE TT+Y C N CAH + +
Sbjct: 81 CEKCQHPELVYTTRQTRSADEGQTTYYTCPN--CAHRFTE 118
>UniRef50_Q1JT63 Cluster: Transcription elongation factor s-II,
putative; n=1; Toxoplasma gondii RH|Rep: Transcription
elongation factor s-II, putative - Toxoplasma gondii RH
Length = 418
Score = 38.7 bits (86), Expect = 0.090
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + + +QTRS+DEPMTTF C C + W+
Sbjct: 381 CFKCRTTKTVYFQMQTRSSDEPMTTFVTCLE--CGNRWK 417
>UniRef50_Q9P1U0 Cluster: DNA-directed RNA polymerase I subunit
RPA12; n=22; Eumetazoa|Rep: DNA-directed RNA polymerase
I subunit RPA12 - Homo sapiens (Human)
Length = 126
Score = 38.7 bits (86), Expect = 0.090
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
D CP CG+ + Q RSADE T FY C N
Sbjct: 84 DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN 117
>UniRef50_Q4P4T4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 147
Score = 38.3 bits (85), Expect = 0.12
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRC--CNHXCAHN 388
CP CG F LQ RSADE T FY C C + + N
Sbjct: 108 CPGCGNDEMNFHTLQLRSADEGTTVFYDCPKCGYKFSQN 146
>UniRef50_UPI000150AA00 Cluster: transcription factor S-II; n=1;
Tetrahymena thermophila SB210|Rep: transcription factor
S-II - Tetrahymena thermophila SB210
Length = 356
Score = 37.9 bits (84), Expect = 0.16
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 278 CPXCGYGRAYFXX-LQTRSADEPMTTFYRCCNHXCAHNWRD 397
C C A+ LQTRS+DEPMT F C + C +W+D
Sbjct: 318 CKGCKKKTAFLVKELQTRSSDEPMTRFMEC--NSCGKSWKD 356
>UniRef50_UPI00005A4643 Cluster: PREDICTED: similar to Transcription
elongation factor A protein 2 (Transcription elongation
factor S-II protein 2) (Testis-specific S-II)
(Transcription elongation factor TFIIS.l); n=1; Canis
lupus familiaris|Rep: PREDICTED: similar to
Transcription elongation factor A protein 2
(Transcription elongation factor S-II protein 2)
(Testis-specific S-II) (Transcription elongation factor
TFIIS.l) - Canis familiaris
Length = 451
Score = 37.9 bits (84), Expect = 0.16
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRS+DEPMTTF C + C + W+
Sbjct: 413 CGRCRRKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 449
>UniRef50_A7AWE5 Cluster: Transcription factor S-II (TFIIS)and
transcription factor S-II (TFIIS) central domain
containing protein; n=1; Babesia bovis|Rep:
Transcription factor S-II (TFIIS)and transcription
factor S-II (TFIIS) central domain containing protein -
Babesia bovis
Length = 302
Score = 37.9 bits (84), Expect = 0.16
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + LQTRS+DEPMTTF C C + W+
Sbjct: 265 CLKCHSMETVYYQLQTRSSDEPMTTFVTCLE--CNNRWK 301
>UniRef50_A6SAU7 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 186
Score = 37.9 bits (84), Expect = 0.16
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPX--CGYGRAYFXXLQTRSADEPMTTFYR 361
+E + + GG AW D+ C C A +Q RSADEPMT FYR
Sbjct: 67 EEKEDVFGGKDAWANADTYPKQCANSECNGMVAAARFVQIRSADEPMTGFYR 118
>UniRef50_Q15560 Cluster: Transcription elongation factor A protein
2; n=55; Coelomata|Rep: Transcription elongation factor
A protein 2 - Homo sapiens (Human)
Length = 299
Score = 37.9 bits (84), Expect = 0.16
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRS+DEPMTTF C + C + W+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297
>UniRef50_P32529 Cluster: DNA-directed RNA polymerase I subunit
RPA12; n=12; Saccharomycetales|Rep: DNA-directed RNA
polymerase I subunit RPA12 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 125
Score = 37.9 bits (84), Expect = 0.16
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
CP CG + LQ RSADE T FY C + C + +R
Sbjct: 86 CPQCGNEEMNYHTLQLRSADEGATVFYTCTS--CGYKFR 122
>UniRef50_A5JZL5 Cluster: Transcription elongation factor, putative;
n=5; Plasmodium|Rep: Transcription elongation factor,
putative - Plasmodium vivax
Length = 435
Score = 37.5 bits (83), Expect = 0.21
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 278 CPXC-GYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C GY Y LQTRS+DEPMTTF C C + W+
Sbjct: 398 CFKCKGYETVYHQ-LQTRSSDEPMTTFVTCLK--CNNRWK 434
>UniRef50_Q9LNT2 Cluster: T20H2.16 protein; n=1; Arabidopsis
thaliana|Rep: T20H2.16 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 122
Score = 37.1 bits (82), Expect = 0.27
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
C C + + QTRSADE TT+Y C N C H + +
Sbjct: 84 CEKCQHPELVYTTRQTRSADEGQTTYYTCPN--CGHRFTE 121
>UniRef50_A7AUU3 Cluster: DNA-directed RNA polymerase 2 subunit,
putative; n=1; Babesia bovis|Rep: DNA-directed RNA
polymerase 2 subunit, putative - Babesia bovis
Length = 163
Score = 37.1 bits (82), Expect = 0.27
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXC 379
CP CG+ A F L R+ D+ M + CCN C
Sbjct: 81 CPRCGHTEATFFQLPERAYDDAMVLVFVCCNPGC 114
>UniRef50_A4R9N1 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 115
Score = 37.1 bits (82), Expect = 0.27
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 263 STDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
S D C C + LQTR ADE T FY C C+ W++
Sbjct: 71 SIDENCRFCPSKTVRYTTLQTRGADEGSTVFYFC--EGCSQKWKE 113
>UniRef50_UPI000049984E Cluster: DNA-directed RNA polymerase I
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase I subunit - Entamoeba
histolytica HM-1:IMSS
Length = 122
Score = 36.7 bits (81), Expect = 0.36
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAH 385
CP CG ++ Q RS DE T +Y C N C H
Sbjct: 83 CPNCGNETMHYHSAQVRSVDEGQTVYYECPN--CGH 116
>UniRef50_Q2H0C1 Cluster: DNA-directed RNA polymerase subunit; n=2;
Sordariales|Rep: DNA-directed RNA polymerase subunit -
Chaetomium globosum (Soil fungus)
Length = 139
Score = 36.7 bits (81), Expect = 0.36
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 251 EXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRC-CNHXC 379
E +DS + CP CG + +Q RSADE T Y C C C
Sbjct: 76 ERIDS-NTECPKCGKTGIRYSEVQQRSADEGSTIIYNCDCGERC 118
>UniRef50_Q5DGH5 Cluster: SJCHGC08580 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC08580 protein - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 36.3 bits (80), Expect = 0.48
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
C CG R + LQTRSADE T Y C
Sbjct: 77 CAYCGNDRMVYVTLQTRSADEGQTVIYTC 105
>UniRef50_A6RCK2 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 104
Score = 36.3 bits (80), Expect = 0.48
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 230 MGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCC 367
+G A+ + ++ CP CG A F Q RSA+ M +Y CC
Sbjct: 52 VGEPASSPCLPRSNKLCPSCGENEAVFFQSQQRSAETGMKLYYVCC 97
>UniRef50_Q4A328 Cluster: Transcription factor S-II (TFIIS) family
protein; n=1; Emiliania huxleyi virus 86|Rep:
Transcription factor S-II (TFIIS) family protein -
Emiliania huxleyi virus 86
Length = 150
Score = 35.9 bits (79), Expect = 0.63
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C CG QTRSADE T F+RC C W+
Sbjct: 112 CNKCGSSEILMAMAQTRSADEGTTMFFRCVK--CNQKWK 148
>UniRef50_Q9VD81 Cluster: DNA-directed RNA polymerase subunit; n=8;
Endopterygota|Rep: DNA-directed RNA polymerase subunit -
Drosophila melanogaster (Fruit fly)
Length = 120
Score = 35.9 bits (79), Expect = 0.63
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
CP C + + + LQ RSADE T F+ C
Sbjct: 81 CPKCNHDKMSYATLQLRSADEGQTVFFTC 109
>UniRef50_Q7QXB3 Cluster: GLP_741_50228_49188; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_741_50228_49188 - Giardia lamblia
ATCC 50803
Length = 346
Score = 35.9 bits (79), Expect = 0.63
Identities = 21/61 (34%), Positives = 23/61 (37%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
K + IM V T C C QTRSADE T Y C + C H W
Sbjct: 286 KAREEIMASVDLKRFVQHTGIQCKKCKQETVVRLEKQTRSADEATTIEYTCSS--CGHRW 343
Query: 392 R 394
R
Sbjct: 344 R 344
>UniRef50_Q5KKH5 Cluster: DNA-directed RNA polymerase subunit; n=1;
Filobasidiella neoformans|Rep: DNA-directed RNA
polymerase subunit - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 132
Score = 35.9 bits (79), Expect = 0.63
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 260 DSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
D C CG+ + +Q RSADE T FY+C N
Sbjct: 87 DPAQEKCQKCGHIGLSYKEMQLRSADEGSTIFYKCLN 123
>UniRef50_Q4Q3Q4 Cluster: Transcription elongation factor-like
protein; n=3; Leishmania|Rep: Transcription elongation
factor-like protein - Leishmania major
Length = 473
Score = 35.5 bits (78), Expect = 0.84
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
C CG F QTRSADEP T + C + C + W
Sbjct: 435 CGRCGKRHCTFYEQQTRSADEPTTKYITCLD--CKNTW 470
>UniRef50_Q4X1W6 Cluster: DNA-directed RNA polymerase subunit; n=9;
Ascomycota|Rep: DNA-directed RNA polymerase subunit -
Aspergillus fumigatus (Sartorya fumigata)
Length = 128
Score = 35.5 bits (78), Expect = 0.84
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCC 367
CP CG A F Q RSA+ M +Y CC
Sbjct: 92 CPSCGEAEAVFFQSQQRSAETGMKLYYVCC 121
>UniRef50_Q7RCT6 Cluster: Putative transcription factor; n=2;
Plasmodium (Vinckeia)|Rep: Putative transcription factor
- Plasmodium yoelii yoelii
Length = 383
Score = 35.1 bits (77), Expect = 1.1
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
C C + YF +QTRSADE T Y C N
Sbjct: 344 CTDCDHDFLYFVNIQTRSADEGSTIIYYCPN 374
>UniRef50_Q4QAW0 Cluster: Transcription elongation factor, putative;
n=2; Leishmania|Rep: Transcription elongation factor,
putative - Leishmania major
Length = 333
Score = 35.1 bits (77), Expect = 1.1
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +2
Query: 245 AWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
A +ST C CG + + QTRS DEPMT C + C WR
Sbjct: 284 AMRTSNSTLFKCRVCGARDSSWEQRQTRSGDEPMTVIITC--NKCNTQWR 331
>UniRef50_P36954 Cluster: DNA-directed RNA polymerase II subunit
RPB9; n=18; Eumetazoa|Rep: DNA-directed RNA polymerase
II subunit RPB9 - Homo sapiens (Human)
Length = 125
Score = 35.1 bits (77), Expect = 1.1
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
D C CG+ A F + A++ M +Y C C H W +
Sbjct: 83 DHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>UniRef50_Q0DP65 Cluster: Os03g0711700 protein; n=4; Oryza
sativa|Rep: Os03g0711700 protein - Oryza sativa subsp.
japonica (Rice)
Length = 156
Score = 34.3 bits (75), Expect = 1.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
C C + Q RSADE T FY+C N C H + +
Sbjct: 117 CEKCKNPELQYYTKQLRSADEGQTVFYKCAN--CRHEFNE 154
>UniRef50_Q4UDQ7 Cluster: DNA-directed RNA polymerase 2 subunit,
putative; n=2; Theileria|Rep: DNA-directed RNA
polymerase 2 subunit, putative - Theileria annulata
Length = 167
Score = 34.3 bits (75), Expect = 1.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAH 385
C CG+ +A F L R D+ M + CCN C +
Sbjct: 81 CLKCGHQKAVFFQLPERVTDDAMMLVFVCCNPGCGY 116
>UniRef50_A0EDT1 Cluster: Chromosome undetermined scaffold_90, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_90,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 317
Score = 34.3 bits (75), Expect = 1.9
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +2
Query: 251 EXVDSTDAXCPXCGYGRAYFXXL-QTRSADEPMTTFYRCCNHXCAHNWR 394
E S CP C Y Q R ADEP T FY C C H ++
Sbjct: 270 EMTQSKGQECPRCHNNYLYIIETKQIRRADEPATIFYEC--FACQHRYK 316
>UniRef50_UPI0000161EFD Cluster: Transcription factor SII homolog;
n=1; Lymphocystis disease virus 1|Rep: Transcription
factor SII homolog - Lymphocystis disease virus 1
Length = 89
Score = 33.9 bits (74), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
C C + + +QTRSADEPM+ C + C + W
Sbjct: 52 CRKCKKTKIFSTHVQTRSADEPMSLIAMC--YSCGYKW 87
>UniRef50_A5KAM3 Cluster: Putative uncharacterized protein; n=4;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 454
Score = 33.9 bits (74), Expect = 2.6
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
C CG +F +QTRSADE T Y C N
Sbjct: 415 CTDCGNDFLHFINIQTRSADEGSTIIYFCPN 445
>UniRef50_A0CNA6 Cluster: Chromosome undetermined scaffold_22, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_22,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 33.9 bits (74), Expect = 2.6
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 278 CPXCGYGRAYFXX-LQTRSADEPMTTFYRCCNHXCAHNWR 394
C CG + Y QTR++DEP T F+ C N C +R
Sbjct: 276 CKGCGQKKVYLVDEKQTRASDEPTTKFFECYN--CGDKFR 313
>UniRef50_Q8SRA1 Cluster: DNA-DIRECTED RNA POLYMERASE I SUBUNIT M;
n=1; Encephalitozoon cuniculi|Rep: DNA-DIRECTED RNA
POLYMERASE I SUBUNIT M - Encephalitozoon cuniculi
Length = 99
Score = 33.9 bits (74), Expect = 2.6
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
CP CG + Q RS DE T FY C
Sbjct: 61 CPACGAEEMMYNTAQLRSTDEGQTVFYSC 89
>UniRef50_Q4Q100 Cluster: Transcription factor S-II-like protein;
n=3; Leishmania|Rep: Transcription factor S-II-like
protein - Leishmania major
Length = 254
Score = 33.5 bits (73), Expect = 3.4
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 269 DAXCPXCGYGR-AYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
+A C CG R QTRSADE T F++C C+ W+
Sbjct: 211 EAFCEMCGVHRPCKTFARQTRSADEGQTIFFQCTK--CSSEWQ 251
>UniRef50_Q55M04 Cluster: DNA-directed RNA polymerase subunit; n=1;
Filobasidiella neoformans|Rep: DNA-directed RNA
polymerase subunit - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 123
Score = 33.5 bits (73), Expect = 3.4
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD*T 403
CP C + A F Q R MT FY C N C H +RD T
Sbjct: 80 CPACHHHGAVFFQDQGRRITTNMTLFYYCTN--CKHLFRDPT 119
>UniRef50_Q2P9W0 Cluster: RNA polymerase I subunit RPA12; n=2;
Trypanosoma brucei|Rep: RNA polymerase I subunit RPA12 -
Trypanosoma brucei brucei
Length = 151
Score = 33.1 bits (72), Expect = 4.5
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 236 GAAAWEXVDSTDAXCPXCGYGR-AYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
G A + +A C CG R Q RSADE T FY+C + C W+
Sbjct: 97 GVAQTDNRVEEEAFCEKCGVPRKCKVFARQIRSADEGQTVFYQCTS--CDSEWQ 148
>UniRef50_A2FMI1 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 256
Score = 33.1 bits (72), Expect = 4.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
CP C +QTR DEPMT F C
Sbjct: 219 CPRCKGNNTTHVAVQTRGGDEPMTNFCEC 247
>UniRef50_Q13D50 Cluster: Putative uncharacterized protein; n=1;
Rhodopseudomonas palustris BisB5|Rep: Putative
uncharacterized protein - Rhodopseudomonas palustris
(strain BisB5)
Length = 100
Score = 32.7 bits (71), Expect = 5.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 263 STDAXCPXCGYGRAY-FXXLQTRSADEPMT-TFYRCCNHXCAH 385
+T CP CG G + F L + P+ ++YRC N C H
Sbjct: 2 TTSPNCPICGQGSSLKFANLDDKLFGTPVVASYYRCGNQQCQH 44
>UniRef50_Q8I241 Cluster: DNA-directed RNA polymerase 2 subunit,
putative; n=3; Plasmodium|Rep: DNA-directed RNA
polymerase 2 subunit, putative - Plasmodium falciparum
(isolate 3D7)
Length = 249
Score = 32.7 bits (71), Expect = 5.9
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
D C CG A F L + + PM Y C N C H W
Sbjct: 76 DWVCKQCGNNEAVFLQLAEKISYNPMALIYVCTNKHC-HYW 115
>UniRef50_Q6TVG7 Cluster: ORF021 RNA polymerase subunit RPO30; n=1;
Bovine papular stomatitis virus|Rep: ORF021 RNA
polymerase subunit RPO30 - Bovine papular stomatitis
virus
Length = 199
Score = 32.3 bits (70), Expect = 7.8
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD*THCD 412
CP C +QTRSADEP Y C N C ++ CD
Sbjct: 144 CPSCRSKNTMPMMIQTRSADEPPLIKYACKN--CQKSFNPPKFCD 186
>UniRef50_Q4N7G2 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria parva
Length = 252
Score = 32.3 bits (70), Expect = 7.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
C CG+ + Q RSADE M+ Y C
Sbjct: 213 CEKCGHDTHLYSTFQARSADEGMSIMYEC 241
>UniRef50_A0DS61 Cluster: Chromosome undetermined scaffold_61, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_61,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 300
Score = 32.3 bits (70), Expect = 7.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 278 CPXCGYGRAYFXX-LQTRSADEPMTTFYRCCN 370
C CG + +QTR++DEP T FY C N
Sbjct: 260 CNNCGQKQMKLVNEIQTRASDEPSTKFYECLN 291
>UniRef50_Q2NEY4 Cluster: RpoM2; n=2; Methanobacteriaceae|Rep: RpoM2
- Methanosphaera stadtmanae (strain DSM 3091)
Length = 105
Score = 32.3 bits (70), Expect = 7.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 263 STDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
+T C CG + +Q +DE T FYRC C + WR
Sbjct: 61 TTRGLCYRCGNRELEWWMVQMHRSDEAETRFYRCTK--CGNTWR 102
>UniRef50_P27948 Cluster: Transcription factor S-II-related protein;
n=2; African swine fever virus|Rep: Transcription factor
S-II-related protein - African swine fever virus (strain
BA71V) (ASFV)
Length = 243
Score = 32.3 bits (70), Expect = 7.8
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRC--CNH 373
CP C + +QTR+ DEP T F C C H
Sbjct: 206 CPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGH 239
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,239,598
Number of Sequences: 1657284
Number of extensions: 6357559
Number of successful extensions: 10634
Number of sequences better than 10.0: 142
Number of HSP's better than 10.0 without gapping: 10445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10629
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36655321736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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