Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e17f
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub...    64   1e-11
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    40   2e-04
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni...    39   6e-04
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    28   0.80 
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    27   1.4  

>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
           subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = +2

Query: 212 KELDYIMGGAAAWEXVDSTDAXCPX--CGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAH 385
           KE+D ++GG  A+E    T+  C    C   RAYF  LQ RSADEPM+TFYRC    C  
Sbjct: 47  KEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCTK--CKF 104

Query: 386 NWRD 397
            WR+
Sbjct: 105 QWRE 108



 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
 Frame = +3

Query: 150 MLFCPTCANMLMV---EEGPEA 206
           M FCPTC N L+V   EEG  A
Sbjct: 1   MQFCPTCGNHLIVAVDEEGRNA 22


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
           C  C   +  +  +QTRSADEPMTTF  C    C + W+
Sbjct: 255 CGKCKQKKVSYYQMQTRSADEPMTTFCECT--VCGNRWK 291


>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
           Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +2

Query: 251 EXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
           E   + +  CP CG     F  LQ RSADE  T FY C
Sbjct: 71  EEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYEC 108


>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 266 TDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
           +D  CP C    A F    +R  D  MT  Y C
Sbjct: 71  SDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVC 103


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 111 LHKFN**SNFFFXMLFCPTCANMLMVEEGPEAALR-N*IILWEELPHGXTLIQQ 269
           LH +N        ML   T   M+   +G +  LR N + LW+ LP G T   Q
Sbjct: 185 LHSYN---EVMEKMLNACTKPEMMQFNDGNDIPLRSNPVSLWKSLPEGETFTPQ 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,063
Number of Sequences: 5004
Number of extensions: 28353
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)