Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e17f
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806...    69   3e-12
12_02_0765 + 22980542-22980570,22980673-22980748,22981113-229812...    48   5e-06
03_01_0015 + 126611-126639,126718-127099                               48   7e-06
07_01_0873 - 7257016-7257957,7260083-7260262                           47   1e-05
03_06_0445 - 33982018-33982965,33984308-33984463                       47   1e-05
03_05_0889 + 28543106-28543354,28544379-28544465,28544548-285446...    34   0.088
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061     27   7.6  

>02_05_0276 +
           27378994-27380094,27380185-27380250,27380586-27380660,
           27381927-27382025,27382353-27382436,27382519-27382868,
           27383190-27383406,27383579-27383658,27383760-27383850,
           27386544-27386672,27388771-27388858,27389967-27390097
          Length = 836

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 27/62 (43%), Positives = 37/62 (59%)
 Frame = +2

Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
           KE++ I   + A +    T   CP C  G AY+  +Q RSADEPM+TFY+CC   C  +W
Sbjct: 774 KEVEPIFSDSDAMKNAPKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDW 833

Query: 392 RD 397
           R+
Sbjct: 834 RE 835


>12_02_0765 +
           22980542-22980570,22980673-22980748,22981113-22981271,
           22981370-22981450
          Length = 114

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 206 SAKELDYIMGGAAAWEXVDSTDAX-CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCA 382
           SA E   ++   A    +  T A  C  CG+G A F     R  +E MT F+ CCN  C 
Sbjct: 51  SAGEFTQVLQDVAGDPTLPRTKAVRCAVCGHGEAVFFQATARG-EEGMTLFFVCCNPSCG 109

Query: 383 HNWRD 397
           H WR+
Sbjct: 110 HRWRE 114


>03_01_0015 + 126611-126639,126718-127099
          Length = 136

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 19/40 (47%), Positives = 23/40 (57%)
 Frame = +2

Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
           C  CG+G A F     R  +E MT F+ CCN  CAH WR+
Sbjct: 98  CAACGHGEAVFFQATARG-EEGMTLFFVCCNLTCAHRWRE 136


>07_01_0873 - 7257016-7257957,7260083-7260262
          Length = 373

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/39 (51%), Positives = 25/39 (64%)
 Frame = +2

Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
           C  CG  +  +  LQTRSADEPMTTF  C N  C ++W+
Sbjct: 335 CGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 371


>03_06_0445 - 33982018-33982965,33984308-33984463
          Length = 367

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/39 (51%), Positives = 25/39 (64%)
 Frame = +2

Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
           C  CG  +  +  LQTRSADEPMTTF  C N  C ++W+
Sbjct: 329 CGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 365


>03_05_0889 +
           28543106-28543354,28544379-28544465,28544548-28544604,
           28544704-28544781
          Length = 156

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
           C  C      +   Q RSADE  T FY+C N  C H + +
Sbjct: 117 CEKCKNPELQYYTKQLRSADEGQTVFYKCAN--CRHEFNE 154


>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
          Length = 875

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +2

Query: 152 AILSNVRQHAYGGRRS*SSAKELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRS 331
           +++S+   + YGG  S  S  E+DYI  G +       +DA  P   +   Y   ++  +
Sbjct: 302 SLISSTYSNGYGGDESSFSGSEVDYIDEGGSP----SDSDAVSPMSRHSWDY---IRRHN 354

Query: 332 ADEPMTTFYRCCNH 373
           +    +TF R  +H
Sbjct: 355 SPHSASTFSRAHSH 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,157,173
Number of Sequences: 37544
Number of extensions: 169404
Number of successful extensions: 248
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)