Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e17f
(555 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69719-2|CAI95605.1| 108|Homo sapiens polymerase (RNA) III (DNA... 105 1e-22
DQ431198-2|ABD95903.1| 108|Homo sapiens DNA-directed RNA polyme... 105 1e-22
BC011932-1|AAH11932.1| 108|Homo sapiens polymerase (RNA) III (D... 105 1e-22
AF126531-1|AAD31424.1| 108|Homo sapiens putative DNA-directed R... 105 1e-22
AF060223-1|AAG43123.1| 108|Homo sapiens My010 protein protein. 105 1e-22
AF051316-1|AAF18268.1| 108|Homo sapiens RNA polymerase III subu... 105 1e-22
AE006462-2|AAK61210.1| 108|Homo sapiens RNA polymerase III subu... 105 1e-22
BC041613-1|AAH41613.1| 348|Homo sapiens transcription elongatio... 40 0.008
AL357134-3|CAI22178.1| 348|Homo sapiens transcription elongatio... 40 0.008
AL109936-2|CAI19025.1| 348|Homo sapiens transcription elongatio... 40 0.008
AJ223473-1|CAA11393.1| 320|Homo sapiens transcription elongatio... 40 0.008
X62585-1|CAA44470.1| 301|Homo sapiens transcription elongation ... 39 0.010
X57198-1|CAA40484.1| 280|Homo sapiens transcription elongation ... 39 0.010
M81601-1|AAA61138.1| 301|Homo sapiens transcription elongation ... 39 0.010
CR542221-1|CAG47017.1| 301|Homo sapiens TCEA1 protein. 39 0.010
BT019995-1|AAV38798.1| 301|Homo sapiens transcription elongatio... 39 0.010
BC072460-1|AAH72460.1| 301|Homo sapiens transcription elongatio... 39 0.010
CR457109-1|CAG33390.1| 126|Homo sapiens ZNRD1 protein. 39 0.014
BX088647-3|CAI95579.1| 126|Homo sapiens zinc ribbon domain cont... 39 0.014
BC050608-1|AAH50608.1| 126|Homo sapiens zinc ribbon domain cont... 39 0.014
BC010898-1|AAH10898.1| 126|Homo sapiens zinc ribbon domain cont... 39 0.014
AL845439-2|CAI18538.1| 126|Homo sapiens zinc ribbon domain cont... 39 0.014
AL671859-2|CAI17577.1| 126|Homo sapiens zinc ribbon domain cont... 39 0.014
AL669914-2|CAI18176.1| 126|Homo sapiens zinc ribbon domain cont... 39 0.014
AF230338-1|AAG50160.1| 126|Homo sapiens nuclear RNA polymerase ... 39 0.014
AF230337-1|AAG50159.1| 126|Homo sapiens nuclear RNA polymerase ... 39 0.014
AF024617-1|AAF40469.1| 126|Homo sapiens transcription-associate... 39 0.014
AB202082-1|BAE78600.1| 126|Homo sapiens zinc ribbon domain cont... 39 0.014
D50495-1|BAA09089.1| 299|Homo sapiens transcription elongation ... 38 0.024
CR456940-1|CAG33221.1| 299|Homo sapiens TCEA2 protein. 38 0.024
BC018896-1|AAH18896.1| 299|Homo sapiens transcription elongatio... 38 0.024
AL590548-5|CAD11901.1| 272|Homo sapiens transcription elongatio... 38 0.024
AL590548-4|CAD11900.1| 270|Homo sapiens transcription elongatio... 38 0.024
AL590548-1|CAI13198.1| 299|Homo sapiens transcription elongatio... 38 0.024
X73534-1|CAA51940.1| 301|Homo sapiens transcription elongation ... 38 0.031
Z23102-1|CAA80649.1| 125|Homo sapiens RNA Polymerase II subunit... 35 0.17
BC067794-1|AAH67794.1| 125|Homo sapiens polymerase (RNA) II (DN... 35 0.17
BC017112-1|AAH17112.1| 125|Homo sapiens polymerase (RNA) II (DN... 35 0.17
AD001527-2|AAB51181.1| 125|Homo sapiens HUMAN DNA-DIRECTED RNA ... 35 0.17
>Z69719-2|CAI95605.1| 108|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide K, 12.3 kDa protein.
Length = 108
Score = 105 bits (251), Expect = 1e-22
Identities = 43/62 (69%), Positives = 48/62 (77%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
KE+D ++GGAAAWE VDST CP C + RAYF LQTRSADEPMTTFY+CCN C H W
Sbjct: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 392 RD 397
RD
Sbjct: 107 RD 108
Score = 29.5 bits (63), Expect = 8.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 150 MLFCPTCANMLMVEEG 197
+LFCP C N L+VEEG
Sbjct: 2 LLFCPGCGNGLIVEEG 17
>DQ431198-2|ABD95903.1| 108|Homo sapiens DNA-directed RNA
polymerases III 12.5 kDa polypeptide protein.
Length = 108
Score = 105 bits (251), Expect = 1e-22
Identities = 43/62 (69%), Positives = 48/62 (77%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
KE+D ++GGAAAWE VDST CP C + RAYF LQTRSADEPMTTFY+CCN C H W
Sbjct: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 392 RD 397
RD
Sbjct: 107 RD 108
Score = 29.5 bits (63), Expect = 8.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 150 MLFCPTCANMLMVEEG 197
+LFCP C N L+VEEG
Sbjct: 2 LLFCPGCGNGLIVEEG 17
>BC011932-1|AAH11932.1| 108|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide K, 12.3 kDa protein.
Length = 108
Score = 105 bits (251), Expect = 1e-22
Identities = 43/62 (69%), Positives = 48/62 (77%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
KE+D ++GGAAAWE VDST CP C + RAYF LQTRSADEPMTTFY+CCN C H W
Sbjct: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 392 RD 397
RD
Sbjct: 107 RD 108
Score = 29.5 bits (63), Expect = 8.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 150 MLFCPTCANMLMVEEG 197
+LFCP C N L+VEEG
Sbjct: 2 LLFCPGCGNGLIVEEG 17
>AF126531-1|AAD31424.1| 108|Homo sapiens putative DNA-directed RNA
polymerase III C11 subunit protein.
Length = 108
Score = 105 bits (251), Expect = 1e-22
Identities = 43/62 (69%), Positives = 48/62 (77%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
KE+D ++GGAAAWE VDST CP C + RAYF LQTRSADEPMTTFY+CCN C H W
Sbjct: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 392 RD 397
RD
Sbjct: 107 RD 108
Score = 29.5 bits (63), Expect = 8.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 150 MLFCPTCANMLMVEEG 197
+LFCP C N L+VEEG
Sbjct: 2 LLFCPGCGNGLIVEEG 17
>AF060223-1|AAG43123.1| 108|Homo sapiens My010 protein protein.
Length = 108
Score = 105 bits (251), Expect = 1e-22
Identities = 43/62 (69%), Positives = 48/62 (77%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
KE+D ++GGAAAWE VDST CP C + RAYF LQTRSADEPMTTFY+CCN C H W
Sbjct: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 392 RD 397
RD
Sbjct: 107 RD 108
Score = 29.5 bits (63), Expect = 8.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 150 MLFCPTCANMLMVEEG 197
+LFCP C N L+VEEG
Sbjct: 2 LLFCPGCGNGLIVEEG 17
>AF051316-1|AAF18268.1| 108|Homo sapiens RNA polymerase III subunit
protein.
Length = 108
Score = 105 bits (251), Expect = 1e-22
Identities = 43/62 (69%), Positives = 48/62 (77%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
KE+D ++GGAAAWE VDST CP C + RAYF LQTRSADEPMTTFY+CCN C H W
Sbjct: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 392 RD 397
RD
Sbjct: 107 RD 108
Score = 29.5 bits (63), Expect = 8.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 150 MLFCPTCANMLMVEEG 197
+LFCP C N L+VEEG
Sbjct: 2 LLFCPGCGNGLIVEEG 17
>AE006462-2|AAK61210.1| 108|Homo sapiens RNA polymerase III subunit
CII protein.
Length = 108
Score = 105 bits (251), Expect = 1e-22
Identities = 43/62 (69%), Positives = 48/62 (77%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
KE+D ++GGAAAWE VDST CP C + RAYF LQTRSADEPMTTFY+CCN C H W
Sbjct: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 392 RD 397
RD
Sbjct: 107 RD 108
Score = 29.5 bits (63), Expect = 8.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 150 MLFCPTCANMLMVEEG 197
+LFCP C N L+VEEG
Sbjct: 2 LLFCPGCGNGLIVEEG 17
>BC041613-1|AAH41613.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 39.5 bits (88), Expect = 0.008
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEPMTTF C + C + W+
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 346
>AL357134-3|CAI22178.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 39.5 bits (88), Expect = 0.008
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEPMTTF C + C + W+
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 346
>AL109936-2|CAI19025.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 39.5 bits (88), Expect = 0.008
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEPMTTF C + C + W+
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 346
>AJ223473-1|CAA11393.1| 320|Homo sapiens transcription elongation
factor TFIIS.h protein.
Length = 320
Score = 39.5 bits (88), Expect = 0.008
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEPMTTF C + C + W+
Sbjct: 282 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 318
>X62585-1|CAA44470.1| 301|Homo sapiens transcription elongation
factor protein.
Length = 301
Score = 39.1 bits (87), Expect = 0.010
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEPMTTF C + C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>X57198-1|CAA40484.1| 280|Homo sapiens transcription elongation
factor protein.
Length = 280
Score = 39.1 bits (87), Expect = 0.010
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEPMTTF C + C + W+
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 278
>M81601-1|AAA61138.1| 301|Homo sapiens transcription elongation
factor SII protein.
Length = 301
Score = 39.1 bits (87), Expect = 0.010
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEPMTTF C + C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>CR542221-1|CAG47017.1| 301|Homo sapiens TCEA1 protein.
Length = 301
Score = 39.1 bits (87), Expect = 0.010
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEPMTTF C + C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>BT019995-1|AAV38798.1| 301|Homo sapiens transcription elongation
factor A (SII), 1 protein.
Length = 301
Score = 39.1 bits (87), Expect = 0.010
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEPMTTF C + C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>BC072460-1|AAH72460.1| 301|Homo sapiens transcription elongation
factor A (SII), 1 protein.
Length = 301
Score = 39.1 bits (87), Expect = 0.010
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEPMTTF C + C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>CR457109-1|CAG33390.1| 126|Homo sapiens ZNRD1 protein.
Length = 126
Score = 38.7 bits (86), Expect = 0.014
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
D CP CG+ + Q RSADE T FY C N
Sbjct: 84 DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN 117
>BX088647-3|CAI95579.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 38.7 bits (86), Expect = 0.014
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
D CP CG+ + Q RSADE T FY C N
Sbjct: 84 DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN 117
>BC050608-1|AAH50608.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 38.7 bits (86), Expect = 0.014
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
D CP CG+ + Q RSADE T FY C N
Sbjct: 84 DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN 117
>BC010898-1|AAH10898.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 38.7 bits (86), Expect = 0.014
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
D CP CG+ + Q RSADE T FY C N
Sbjct: 84 DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN 117
>AL845439-2|CAI18538.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 38.7 bits (86), Expect = 0.014
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
D CP CG+ + Q RSADE T FY C N
Sbjct: 84 DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN 117
>AL671859-2|CAI17577.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 38.7 bits (86), Expect = 0.014
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
D CP CG+ + Q RSADE T FY C N
Sbjct: 84 DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN 117
>AL669914-2|CAI18176.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 38.7 bits (86), Expect = 0.014
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
D CP CG+ + Q RSADE T FY C N
Sbjct: 84 DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN 117
>AF230338-1|AAG50160.1| 126|Homo sapiens nuclear RNA polymerase I
small specific subunit Rpa12 protein.
Length = 126
Score = 38.7 bits (86), Expect = 0.014
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
D CP CG+ + Q RSADE T FY C N
Sbjct: 84 DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN 117
>AF230337-1|AAG50159.1| 126|Homo sapiens nuclear RNA polymerase I
small specific subunit Rpa12 protein.
Length = 126
Score = 38.7 bits (86), Expect = 0.014
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
D CP CG+ + Q RSADE T FY C N
Sbjct: 84 DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN 117
>AF024617-1|AAF40469.1| 126|Homo sapiens transcription-associated
zinc ribbon protein protein.
Length = 126
Score = 38.7 bits (86), Expect = 0.014
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
D CP CG+ + Q RSADE T FY C N
Sbjct: 84 DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN 117
>AB202082-1|BAE78600.1| 126|Homo sapiens zinc ribbon domain
containing, 1 protein.
Length = 126
Score = 38.7 bits (86), Expect = 0.014
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCN 370
D CP CG+ + Q RSADE T FY C N
Sbjct: 84 DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN 117
>D50495-1|BAA09089.1| 299|Homo sapiens transcription elongation
factor S-II, hS-II-T1 protein.
Length = 299
Score = 37.9 bits (84), Expect = 0.024
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRS+DEPMTTF C + C + W+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297
>CR456940-1|CAG33221.1| 299|Homo sapiens TCEA2 protein.
Length = 299
Score = 37.9 bits (84), Expect = 0.024
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRS+DEPMTTF C + C + W+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297
>BC018896-1|AAH18896.1| 299|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 299
Score = 37.9 bits (84), Expect = 0.024
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRS+DEPMTTF C + C + W+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297
>AL590548-5|CAD11901.1| 272|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 272
Score = 37.9 bits (84), Expect = 0.024
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRS+DEPMTTF C + C + W+
Sbjct: 234 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 270
>AL590548-4|CAD11900.1| 270|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 270
Score = 37.9 bits (84), Expect = 0.024
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRS+DEPMTTF C + C + W+
Sbjct: 234 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 270
>AL590548-1|CAI13198.1| 299|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 299
Score = 37.9 bits (84), Expect = 0.024
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRS+DEPMTTF C + C + W+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297
>X73534-1|CAA51940.1| 301|Homo sapiens transcription elongation
factor protein.
Length = 301
Score = 37.5 bits (83), Expect = 0.031
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + +QTRSADEP+TTF C + C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPVTTFVVC--NECGNRWK 299
>Z23102-1|CAA80649.1| 125|Homo sapiens RNA Polymerase II subunit
14.5 kD protein.
Length = 125
Score = 35.1 bits (77), Expect = 0.17
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
D C CG+ A F + A++ M +Y C C H W +
Sbjct: 83 DHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>BC067794-1|AAH67794.1| 125|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide I, 14.5kDa protein.
Length = 125
Score = 35.1 bits (77), Expect = 0.17
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
D C CG+ A F + A++ M +Y C C H W +
Sbjct: 83 DHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>BC017112-1|AAH17112.1| 125|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide I, 14.5kDa protein.
Length = 125
Score = 35.1 bits (77), Expect = 0.17
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
D C CG+ A F + A++ M +Y C C H W +
Sbjct: 83 DHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>AD001527-2|AAB51181.1| 125|Homo sapiens HUMAN DNA-DIRECTED RNA
POLYMERASE II 14.5 KD SUBUNIT protein.
Length = 125
Score = 35.1 bits (77), Expect = 0.17
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
D C CG+ A F + A++ M +Y C C H W +
Sbjct: 83 DHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,382,680
Number of Sequences: 237096
Number of extensions: 946084
Number of successful extensions: 1245
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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