Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e17f
(555 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-P... 115 4e-26
S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase... 48 9e-06
AE014297-1835|AAF55045.1| 129|Drosophila melanogaster CG3284-PA... 48 9e-06
S66940-1|AAB29028.2| 129|Drosophila melanogaster RNA polymerase... 45 8e-05
X53670-1|CAA37710.1| 313|Drosophila melanogaster protein ( Dros... 41 0.001
L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription ... 41 0.001
AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p pro... 41 0.001
AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA... 41 0.001
AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-P... 35 0.064
AE014297-758|AAF54244.2| 390|Drosophila melanogaster CG11735-PA... 28 9.7
>AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-PA,
isoform A protein.
Length = 108
Score = 115 bits (277), Expect = 4e-26
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +2
Query: 212 KELDYIMGGAAAWEXVDSTDAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNW 391
KE+D+++GG AAWE VDSTDA CP CG+ RAYF +QTRSADEPMTTFY+CCNH C H W
Sbjct: 47 KEVDHVLGGKAAWENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTW 106
Query: 392 RD 397
RD
Sbjct: 107 RD 108
Score = 27.9 bits (59), Expect = 9.7
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 150 MLFCPTCANMLMVEE 194
+ FCP+C N+L++EE
Sbjct: 2 LFFCPSCGNILIIEE 16
>S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase II
15-kda subunit protein.
Length = 129
Score = 48.0 bits (109), Expect = 9e-06
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
D CP C + A F QTR A+E M +Y C N C H W +
Sbjct: 87 DHACPKCSHREAVFFKAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>AE014297-1835|AAF55045.1| 129|Drosophila melanogaster CG3284-PA
protein.
Length = 129
Score = 48.0 bits (109), Expect = 9e-06
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
D CP C + A F QTR A+E M +Y C N C H W +
Sbjct: 87 DHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>S66940-1|AAB29028.2| 129|Drosophila melanogaster RNA polymerase II
subunit 9 protein.
Length = 129
Score = 44.8 bits (101), Expect = 8e-05
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 269 DAXCPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWRD 397
D CP C + A QTR A+E M +Y C N C H W +
Sbjct: 87 DHACPKCSHREAVSFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>X53670-1|CAA37710.1| 313|Drosophila melanogaster protein (
Drosophila gene forRNA polymerase II elongation factor
DmS-II. ).
Length = 313
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + LQTRSADEPMTTF C + C + W+
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRWK 311
>L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription
elongation factor protein.
Length = 313
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + LQTRSADEPMTTF C + C + W+
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRWK 311
>AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p
protein.
Length = 313
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + LQTRSADEPMTTF C + C + W+
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRWK 311
>AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA
protein.
Length = 313
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRCCNHXCAHNWR 394
C C + LQTRSADEPMTTF C + C + W+
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRWK 311
>AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-PA
protein.
Length = 120
Score = 35.1 bits (77), Expect = 0.064
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 278 CPXCGYGRAYFXXLQTRSADEPMTTFYRC 364
CP C + + + LQ RSADE T F+ C
Sbjct: 81 CPKCNHDKMSYATLQLRSADEGQTVFFTC 109
>AE014297-758|AAF54244.2| 390|Drosophila melanogaster CG11735-PA
protein.
Length = 390
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 11 KLNKIIYEIFSWSLVSNYQFXNVYDXTILF 100
K+NK+I+ I WS V N F +++ ++
Sbjct: 27 KMNKLIFHIVFWSNVINLSFVGLFESIYVY 56
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,036,999
Number of Sequences: 53049
Number of extensions: 298702
Number of successful extensions: 423
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2131214097
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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