Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e12r
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001     33   0.19 
05_01_0315 - 2468267-2468293,2469021-2469070,2469159-2469234,246...    28   7.0  

>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
          Length = 1472

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 412 LCLIIHIFSAGQSLFCMLNILLFFCYFVIPFETKIIINALTIITV 278
           L L+IH+F+A   LF    +L   C    P   K++INA T + V
Sbjct: 170 LLLLIHLFTAAPVLFMAEVVLAGLCLAATPICVKLLINASTYLGV 214


>05_01_0315 -
           2468267-2468293,2469021-2469070,2469159-2469234,
           2469498-2469575,2469967-2470048,2470146-2470238,
           2470564-2470673,2470831-2470893,2471293-2471344,
           2471421-2471545,2472681-2472794,2472917-2472961,
           2473278-2473337,2474725-2474778,2474944-2474992,
           2475071-2475252,2475349-2475404,2475491-2475584
          Length = 469

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -1

Query: 508 GVEFKFLFCIVDPLTNIFH*KKFIVSNK*ML*LCLIIHIFSAGQSLFCMLNILLFFCYF 332
           GV +   F +++ +T+ FH   F+VS          I I S G   F  L   L + YF
Sbjct: 235 GVRWILSFLLMEAMTHFFHYNAFVVSRLWQQLSPFEIFIISYGVLNFMWLKFFLIWRYF 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,540,285
Number of Sequences: 37544
Number of extensions: 273211
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)