Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e12f
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6281| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.89 
SB_38526| Best HMM Match : Gaa1 (HMM E-Value=0.51)                     30   1.6  
SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_47653| Best HMM Match : zf-CCHC (HMM E-Value=0.0017)                28   6.3  
SB_16446| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_6281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 153 RPPK-RPSSAKTRVQTKLTRPRCSQGSVKD-TPKYS-EPNNHQEGCDSSIFSRERSLWSV 323
           RPP  RP SAK R +++  RP  SQ    D  P +  +P   Q+ C S  FSR   L S+
Sbjct: 116 RPPSSRPQSAKGRPRSRSGRPMSSQSRGSDIIPDHEMQPKQLQQQCVS--FSRYTPLPSI 173


>SB_38526| Best HMM Match : Gaa1 (HMM E-Value=0.51)
          Length = 189

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 389 LRGVCFSIKNNLEYFYATFFFF 454
           L G+C S+ N LE F+ +FFF+
Sbjct: 68  LEGICRSLNNLLERFHQSFFFY 89


>SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +3

Query: 21  TGRISRTKWTKES*LAALRDTSPAVTRSKRYTGADRRKTARAC*RPPKRPSSAKT-RVQT 197
           T + SR +  + S  ++   +SP     K+ + A +R+++ +    PKR +  K  R+++
Sbjct: 48  TSQRSRARKRQSSSSSSTTSSSPERNIKKKSSKAPKRQSSSSSSSSPKRKTKKKQHRLKS 107

Query: 198 KLTRPRCSQGSVKDTPKYSEPN 263
             TR + S  S   +P+    N
Sbjct: 108 GNTRSQTSSSSAASSPERKSGN 129


>SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1376

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = +3

Query: 153 RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQEGCDSSIFSRERSL 314
           RP  R  +AK  V    T    SQ     TP   E N  +EG D+   SRE+ L
Sbjct: 551 RPVPRAKTAKDLVAADQTVRPVSQACRLQTPGSPEQNKQEEGADT--LSREQQL 602


>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 165 RPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQEGCDSSIFSRERSLWS 320
           RPSS +   +TK   PR  + + + TPK  + N      D S   R +S+ S
Sbjct: 404 RPSSRRNPRETKTNTPRSRRSNSRKTPKSKKSNLSTAASDQS--ERSKSIAS 453


>SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 129 RKTARAC*RPPKRPSSAKTRVQTKLT 206
           R+ ARAC R PK PS++ T    K T
Sbjct: 541 RRDARACARAPKMPSASYTHQSRKAT 566


>SB_47653| Best HMM Match : zf-CCHC (HMM E-Value=0.0017)
          Length = 759

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 448 FFSYIKCSVHGDYLHCLLVEFKKNDSCL*T 537
           FFS+ +CS HG      LV++   D C+ T
Sbjct: 620 FFSFQRCSTHGTSPPTYLVQYSLADLCVLT 649


>SB_16446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1598

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +1

Query: 1   DTKLCFVPVASLERNGQKKVDWQRYAIHRRPSRGPNGILAQIGGKRQGPAEDHQNDLLRQ 180
           DT L +  +    ++GQK    Q   + + P RG         G  + P + H++ +L  
Sbjct: 526 DTGLHYKGMTKPPQSGQKDTGMQYKGVTKPPQRGQKDTGLHYKGMTKPPQKGHKDTVLHY 585

Query: 181 KRGSK 195
           K  +K
Sbjct: 586 KGMTK 590


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,252,031
Number of Sequences: 59808
Number of extensions: 355148
Number of successful extensions: 756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)