Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e12f
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    31   0.59 
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U40951-2|AAG01565.2|  317|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    27   9.5  

>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 156 PPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQEGCDSSIFSRERS 311
           PPK PS +     TK  R   S GS   TPK+++P+ + +    ++   + S
Sbjct: 469 PPKEPSISSEPTTTKKPRKSFSPGSA--TPKHTQPSENGKASGKTVGKEKES 518


>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
           protein B0379.3b protein.
          Length = 1050

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 129 RKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSE-PN 263
           R T R+  RPP+ P+S   RV    T P   QG+    P+ S  PN
Sbjct: 438 RNTDRSTSRPPRAPTSPVNRVME--TDPLMGQGTSSGAPQRSAIPN 481


>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
           protein B0379.3a protein.
          Length = 1054

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 129 RKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSE-PN 263
           R T R+  RPP+ P+S   RV    T P   QG+    P+ S  PN
Sbjct: 442 RNTDRSTSRPPRAPTSPVNRVME--TDPLMGQGTSSGAPQRSAIPN 485


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 90  AVTRSKRYTG-ADRRKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTP 245
           A +RSK     A RR++  A   PP  P  AK+R ++   R R S  + K  P
Sbjct: 334 AKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPP 386


>Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical
           protein M28.2 protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +1

Query: 244 LSILNLIIIKKAVIVQFSRVKDLSGQCCVVLFCKS*SKITILYFGHGVATWSMFLNQ 414
           +SI+  II+ K  +  F+    +S  C  V       K T+LY+    + W  FLNQ
Sbjct: 431 VSIVLCIILFKIAMTVFAMGLVVSSVCVPVF---GDDKYTLLYWNSDSSNWKSFLNQ 484


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 75  RDTSPAVTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTP 245
           R+TSPA  RSK    ++  + +    R P+R S+       +  R R S+    + P
Sbjct: 85  RETSPAPKRSKETRESESPEKSPVRSRSPRRSSARSPSRSPRRRRERSSERKQSEEP 141


>U40951-2|AAG01565.2|  317|Caenorhabditis elegans Hypothetical
           protein ZK721.3 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 171 SSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQEGCDSSIFSRERSL 314
           SS K    TK+T  R    S  +T      NNH +   ++  + ER L
Sbjct: 54  SSTKINHSTKMTMVRAQSTSCSETSPLFSSNNHYKSTGTTQKNEERLL 101


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 75  RDTSPAVTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTP 245
           R+TSPA  RSK    ++  + +    R P+R S+       +  R R S+    + P
Sbjct: 85  RETSPAPKRSKETRESESPEKSPVRSRSPRRSSARSPSRSPRRRRERSSERKQSEEP 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,794,454
Number of Sequences: 27780
Number of extensions: 262540
Number of successful extensions: 573
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)