Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e10r
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 31 0.14
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 29 0.73
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.73
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 1.7
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 1.7
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 3.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.9
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 6.8
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe... 25 9.0
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 31.5 bits (68), Expect = 0.14
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = -3
Query: 755 LEEQLYNSIVXADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 588
L E + V D +S E K KH + + +KS + ++ K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169
Query: 587 LQGSKD 570
+ K+
Sbjct: 170 SKYIKE 175
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 29.1 bits (62), Expect = 0.73
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 404 VSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNG 294
+ +K I L++NN+ KILN R V+ VGT NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.73
Identities = 27/107 (25%), Positives = 50/107 (46%)
Frame = -1
Query: 748 SSFTIASSXPITTVRLKRASIYTRRRRAKSSQM**TN*YETTR*TAWSTPINFGSRAPRT 569
S++TI+SS P+T+ + + T +S + TT T ST + + S +
Sbjct: 512 SNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTT-STSVPYTSTPVTS 570
Query: 568 SSVIVSQLSSDLSSPKTPLSLCTSATVSL*R*VMMFTATMADLPSAT 428
S+ +S + S+P T + TS +V ++T+T P++T
Sbjct: 571 SNYTISSSTPVTSTPVTTTNCTTSTSV-------LYTSTPITSPNST 610
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 746 QLYNSIVXADYDSAVEKSKHLYEEKKS 666
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 419 KTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVGTN 303
K SPKV+WK +W + K K +++ +LG G++
Sbjct: 28 KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 674 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 582
K+ +T+ NKL+ ++ + +YAY L LQ
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 586 SRAPRTSSVIVSQLSSDLSSP-KTPLSLCTSATVS 485
S P T S + S LSS SSP T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 6.8
Identities = 25/91 (27%), Positives = 39/91 (42%)
Frame = -3
Query: 353 ILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYIYNREYSKA 174
+++T +Q+L +G P AFGVNS+ +A + P DN N +
Sbjct: 813 LVDTHIHQFLYIGKDAVPQLLIDAFGVNSLADLKAGRFTMPV---IDNPL---NVRINAI 866
Query: 173 LTLSRTLETSGNRMAWGYNGRVIGSPEHYAW 81
L R+L+ M Y R G P+ +W
Sbjct: 867 LGKLRSLDKGSTIMPSLYLVRGDGDPQLRSW 897
>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 321 YQILVTLSVQDLEVDLVVLPQSNELPADF 407
+Q+ V ++QDL+ L PQ N L +F
Sbjct: 3 FQVRVKQNMQDLDNRLAAFPQLNSLEKNF 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,700
Number of Sequences: 5004
Number of extensions: 58197
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -