Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e10r
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)         30   1.8  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    29   3.1  
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_5215| Best HMM Match : DUF745 (HMM E-Value=1.6)                     28   9.5  

>SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)
          Length = 1008

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 494 DGLALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVY 360
           D L   L +  HG DG L F D ++ TS +++  F  +W+  + +
Sbjct: 127 DCLLYILFSPGHGGDGFLKFQDAEEVTSVELADAFEQMWQKQRYH 171


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = -1

Query: 721  PITTVRLKRASIYTR-RRRAKSSQM**TN*YETTR*TAWSTPINFGSRAPRTSSVIVSQL 545
            P T +   R+S  T  RRR +++Q+  T  Y+ T  T+    +   SR   T ++ VS  
Sbjct: 3951 PTTGISESRSSSVTSIRRRFENNQLEET--YKRTETTSLVMDVQERSRESTTLAIDVSPR 4008

Query: 544  SSDLSSPKTP 515
            +  ++SP+TP
Sbjct: 4009 APSVTSPRTP 4018


>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 23/97 (23%), Positives = 43/97 (44%)
 Frame = -3

Query: 755  LEEQLYNSIVXADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGS 576
            L   L N I  A   +A  +   L++E K ++++NVV + +    +   + A++ W Q  
Sbjct: 810  LNRLLRNEISNAQGPNAAGQKNFLFQEVK-DILSNVVQRNMVRESLQAKKDAFESWRQVI 868

Query: 575  KDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLSND 465
            +  +  C P +  L   + A+ L   +D L      D
Sbjct: 869  EVALATC-PGDILLQDVKQAVILETLQDLLMKIAQED 904


>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 426 TVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETITDDVLGALEPKLIGV 605
           TVA+    ++   I +    +  ++V +     G D SE  ++  T +VL ALE + + +
Sbjct: 71  TVAKTGMILLCGEITSNAVVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDI 130

Query: 606 LHAVHL 623
            H VH+
Sbjct: 131 AHGVHV 136


>SB_5215| Best HMM Match : DUF745 (HMM E-Value=1.6)
          Length = 171

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = -3

Query: 749 EQLYNSIVXADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 570
           ++L  S + A  D A+EK KHL +    +++T    ++I+  ++  +E    +  Q SKD
Sbjct: 65  KELATSAISAAKDLAIEKGKHLIDRTSVKMLTPKNVEVIK--QITGLEPNTPVITQKSKD 122

Query: 569 IV 564
           I+
Sbjct: 123 IL 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,913,447
Number of Sequences: 59808
Number of extensions: 457345
Number of successful extensions: 4663
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4663
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)