Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e08r
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969...    30   1.7  
01_05_0126 - 18391879-18391937,18392021-18392102,18392508-183926...    28   7.1  
07_03_1485 - 26896220-26896314,26896380-26896791                       28   9.3  
05_06_0129 - 25856981-25857568,25857652-25858058,25858227-25858410     28   9.3  

>01_06_1202 +
           35396165-35396260,35396398-35396549,35396694-35396938,
           35397044-35398350
          Length = 599

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 735 PIKKPGTYILVLKYFWNTYKCTKILKMKFGLIVVFVL 625
           P++   T   V +Y W     TK+ K+KFG +V  VL
Sbjct: 453 PVQFDYTAQNVPRYLWQPVPATKLYKLKFGSVVQIVL 489


>01_05_0126 -
           18391879-18391937,18392021-18392102,18392508-18392667,
           18392739-18392807,18392850-18392992,18393069-18393203,
           18393283-18393341,18394090-18394187,18394347-18394510,
           18394586-18394647,18394803-18394977,18396331-18396588,
           18396694-18396841,18398458-18398813
          Length = 655

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 584 VVGQSPSLIAQSVRPDACTRSNRPRQLPPARSLIIFFTPVSVFLEDSQ--ARRQ 429
           + GQ PSL   +  P     S   R+  PAR L++     S  L  S   ARRQ
Sbjct: 54  IAGQLPSLTTAAAPPPHLRLSTIARRSSPARQLVVAVASPSTELSRSSTVARRQ 107


>07_03_1485 - 26896220-26896314,26896380-26896791
          Length = 168

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 622 NSRLLWLIECPLTWLGNHPA-LLPNQYALT 536
           N  +L  IE    W GNHP+ LLPN Y  T
Sbjct: 136 NEMILDGIELYHQWTGNHPSQLLPNYYYQT 165


>05_06_0129 - 25856981-25857568,25857652-25858058,25858227-25858410
          Length = 392

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 99  PPVRESHTFKIPLFYMYYVLTLNRY*EPKLPIANTCDDVIQR 224
           PP  + +TF  P  Y Y+ +  N Y  P L   NT  + IQR
Sbjct: 280 PPGYDPNTFFHPQ-YAYFRMQPNEYFNPVLGAINTLSESIQR 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,114,191
Number of Sequences: 37544
Number of extensions: 355561
Number of successful extensions: 673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)