Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e08r
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82095-3|CAB05028.1|  411|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z82095-3|CAB05028.1|  411|Caenorhabditis elegans Hypothetical
           protein ZK849.5 protein.
          Length = 411

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 209 RCYPKACFFTKFHLNRYSLID*NIYDYLVFFSIL 310
           RCY   C FT+ HL+RY   D  ++ ++ FF +L
Sbjct: 250 RCYFAVCVFTRQHLDRY---DSKMHTWITFFPVL 280


>Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical
           protein W09D6.1b protein.
          Length = 714

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 68  LLGCNTIHIYTPCTRVAYIQNSIIL 142
           +LGC +  +Y  C +   IQNS+IL
Sbjct: 596 VLGCKSTGLYFICVKTGQIQNSVIL 620


>Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical
           protein W09D6.1a protein.
          Length = 707

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 68  LLGCNTIHIYTPCTRVAYIQNSIIL 142
           +LGC +  +Y  C +   IQNS+IL
Sbjct: 596 VLGCKSTGLYFICVKTGQIQNSVIL 620


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical protein
            C33B4.3a protein.
          Length = 1110

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 430  CLRACESSRKTETGVKKII-RLLAGGSCRGL 519
            CLR C+ SR T+ GV +I  R +   + RGL
Sbjct: 1078 CLRQCDRSRFTQLGVTRIAHRQIIESALRGL 1108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,712,463
Number of Sequences: 27780
Number of extensions: 354682
Number of successful extensions: 766
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)